Annotation Detail for SEPT3
Basic Information Top
| Gene Symbol: | SEPT3 ( MGC133218,SEP3,bK250D10.3 ) |
|---|---|
| Gene Full Name: | septin 3 |
| Band: | 22q13.2 |
| Quick Links | Entrez ID:55964; OMIM: 608314; Uniprot ID:SEPT3_HUMAN; ENSEMBL ID: ENSG00000100167; HGNC ID: 10750 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.120483
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 4 / 62319 | 64 |  |
| fetus | 82 / 564012 | 145 | |
| neonate | 0 / 31097 | 0 | |
| infant | 5 / 23620 | 211 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 72 / 1939121 | 37 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 11 / 263845 | 41 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 222 / 3360307 | 66 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 14 / 125680 | 111 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 7 / 46356 | 151 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 191 / 1100989 | 173 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 19 / 211054 | 90 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 1 / 24145 | 41 | |
| liver | 1 / 207743 | 4 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 11 / 330442 | 33 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 5 / 51780 | 96 | |
Microarray in - Probe name: A_23_P211572
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.47 ± 0.44 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.74 ± 0.42 | |
| Basal Part of Pons | 8.79 ± 0.35 | |
| Cerebellar Cortex | 8.5 ± 0.31 | |
| Cerebellar Nuclei | 8.22 ± 0.44 | |
| Claustrum | 9.74 ± 0.63 | |
| Epithalamus | 7.99 ± 0.51 | |
| Frontal Lobe | 8.75 ± 0.57 | |
| Globus Pallidus | 8.16 ± 0.39 | |
| Hypothalamus | 8.42 ± 0.42 | |
| Insula | 8.86 ± 0.45 | |
| Limbic Lobe | 9.39 ± 0.45 | |
| Mesencephalon | 8.71 ± 0.61 | |
| Myelencephalon | 8.75 ± 0.49 | |
| Occipital Lobe | 8.95 ± 0.44 | |
| Parietal Lobe | 8.95 ± 0.65 | |
| Pontine Tegmentum | 8.65 ± 0.43 | |
| Striatum | 8.46 ± 0.56 | |
| Subthalamus | 8.58 ± 0.14 | |
| Temporal Lobe | 8.9 ± 0.43 | |
| Thalamus | 8.59 ± 0.36 | |
| White Matter | 6.92 ± 0.76 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sept3 | CB | Cerebellum | 92.48 | |
| 100 | | |||
| Sept3 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Sept3 | HIP | Hippocampal region | 93.38 | |
| 100 | | |||
| Sept3 | HPF | Hippocampal formation | 99.58 | |
| 100 | | |||
| Sept3 | HY | Hypothalamus | 90.93 | |
| 83.28 | | |||
| Sept3 | LSX | Lateral septal complex | 68.95 | |
| 53.54 | | |||
| Sept3 | MB | Midbrain | 93.26 | |
| 98.45 | | |||
| Sept3 | MY | Medulla | 82.26 | |
| 100 | | |||
| Sept3 | OLF | Olfactory bulb | 90.67 | |
| 98.16 | | |||
| Sept3 | P | Pons | 81.05 | |
| 100 | | |||
| Sept3 | PAL | Pallidum | 82.74 | |
| 96.07 | | |||
| Sept3 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Sept3 | sAMY | Striatum-like amygdalar nuclei | 89.19 | |
| 79.18 | | |||
| Sept3 | STR | Striatum | 54.38 | |
| 48.2 | | |||
| Sept3 | STRd | Striatum dorsal region | 47.44 | |
| 43.96 | | |||
| Sept3 | STRv | Striatum ventral region | 54.43 | |
| 44.23 | | |||
| Sept3 | TH | Thalamus | 91.4 | |
| 93.68 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00079344 | 20 | 282 | 301 | TPWGIIEVENLNHCEFALLR | Peptide Atlas |