AutismKB 2.0

Annotation Detail for PCDHGB7


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Basic Information Top
Gene Symbol:PCDHGB7 ( ME6,PCDH-GAMMA-B7 )
Gene Full Name: protocadherin gamma subfamily B, 7
Band: 5q31.3
Quick LinksEntrez ID:56099; OMIM: 606304; Uniprot ID:PCDGJ_HUMAN; ENSEMBL ID: ENSG00000081853,ENSG00000240184,ENSG00000240764,EN; HGNC ID: 8714
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209079_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts18.5
Adipocyte331.15
AdrenalCortex90.75
Adrenalgland257.95
Amygdala3124.35
Appendix116.5
AtrioventricularNode40.6
BDCA4+_DentriticCells99.75
Bonemarrow33.85
BronchialEpithelialCells59.7
CD105+_Endothelial20.85
CD14+_Monocytes16.45
CD19+_BCells(neg._sel.)16.1
CD33+_Myeloid23.9
CD34+27.25
CD4+_Tcells22.15
CD56+_NKCells14.05
CD71+_EarlyErythroid39.7
CD8+_Tcells17.6
CardiacMyocytes123.05
Caudatenucleus1045.2
Cerebellum961.45
CerebellumPeduncles535
CiliaryGanglion54.7
CingulateCortex657.45
Colorectaladenocarcinoma73.65
DorsalRootGanglion79
FetalThyroid278.35
Fetalbrain866.2
Fetalliver25.8
Fetallung353.4
GlobusPallidus205.9
Heart119.2
Hypothalamus1013.2
Kidney61.2
Leukemia_chronicMyelogenousK-56220.8
Leukemia_promyelocytic-HL-6021.35
Leukemialymphoblastic(MOLT-4)29.35
Liver125.25
Lung837.2
Lymphnode46.6
Lymphoma_burkitts(Daudi)168.3
Lymphoma_burkitts(Raji)67.35
MedullaOblongata451.05
OccipitalLobe692.3
OlfactoryBulb401.05
Ovary97.9
Pancreas51.65
PancreaticIslet140.1
ParietalLobe415.4
Pituitary243.1
Placenta216
Pons253.3
PrefrontalCortex2087.4
Prostate340.25
Salivarygland63.65
SkeletalMuscle20.7
Skin69.8
SmoothMuscle210.6
Spinalcord1032.85
SubthalamicNucleus370.85
SuperiorCervicalGanglion105.25
TemporalLobe346.9
Testis110.15
TestisGermCell126.75
TestisIntersitial73
TestisLeydigCell83.75
TestisSeminiferousTubule81.35
Thalamus570.1
Thymus82.7
Thyroid493.25
Tongue99.75
Tonsil38.75
Trachea179.85
TrigeminalGanglion73.1
Uterus289.3
UterusCorpus174.2
WholeBlood16.7
Wholebrain1006.55
colon76.65
pineal_day2167.04
pineal_night1897.1
retina1532.45
small_intestine60.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1627_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.4 ± 0.75
Basal Forebrain6.08 ± 0.18
Basal Part of Pons6.07 ± 0.55
Cerebellar Cortex6.35 ± 0.3
Cerebellar Nuclei5.92 ± 0.32
Claustrum6.48 ± 0.69
Epithalamus5.77 ± 0.49
Frontal Lobe5.88 ± 0.44
Globus Pallidus6 ± 0.61
Hypothalamus5.89 ± 0.39
Insula5.72 ± 0.42
Limbic Lobe6.12 ± 0.52
Mesencephalon6.14 ± 0.39
Myelencephalon6.06 ± 0.54
Occipital Lobe6.35 ± 0.55
Parietal Lobe5.95 ± 0.44
Pontine Tegmentum5.93 ± 0.48
Striatum6.13 ± 0.58
Subthalamus6.28 ± 0.25
Temporal Lobe5.88 ± 0.53
Thalamus6.05 ± 0.37
White Matter5.91 ± 0.26
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pcdhgb7CBCerebellum11.69
12.93
Pcdhgb7CTXCerebral cortex2.59
2.94
Pcdhgb7HIPHippocampal region4.75
4.68
Pcdhgb7HPFHippocampal formation3.86
3.53
Pcdhgb7HYHypothalamus0.84
0.57
Pcdhgb7LSXLateral septal complex5.5
7.28
Pcdhgb7MBMidbrain1.52
1.95
Pcdhgb7MYMedulla2.86
2.87
Pcdhgb7OLFOlfactory bulb5.73
4.41
Pcdhgb7PPons0.98
0.98
Pcdhgb7PALPallidum0.59
0.4
Pcdhgb7RHPRetrohippocampal region2.15
1.82
Pcdhgb7sAMYStriatum-like amygdalar nuclei0.86
0.85
Pcdhgb7STRStriatum2.76
1.97
Pcdhgb7STRdStriatum dorsal region2.85
1.92
Pcdhgb7STRvStriatum ventral region2.67
1.45
Pcdhgb7THThalamus2.42
2.5
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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