AutismKB 2.0

Annotation Detail for PCDHGA6


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Basic Information Top
Gene Symbol:PCDHGA6 ( PCDH-GAMMA-A6 )
Gene Full Name: protocadherin gamma subfamily A, 6
Band: 5q31
Quick LinksEntrez ID:56109; OMIM: 606293; Uniprot ID:PCDG6_HUMAN; ENSEMBL ID: ENSG00000081853,ENSG00000240184,ENSG00000240764,EN; HGNC ID: 8704
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209079_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts18.5
Adipocyte331.15
AdrenalCortex90.75
Adrenalgland257.95
Amygdala3124.35
Appendix116.5
AtrioventricularNode40.6
BDCA4+_DentriticCells99.75
Bonemarrow33.85
BronchialEpithelialCells59.7
CD105+_Endothelial20.85
CD14+_Monocytes16.45
CD19+_BCells(neg._sel.)16.1
CD33+_Myeloid23.9
CD34+27.25
CD4+_Tcells22.15
CD56+_NKCells14.05
CD71+_EarlyErythroid39.7
CD8+_Tcells17.6
CardiacMyocytes123.05
Caudatenucleus1045.2
Cerebellum961.45
CerebellumPeduncles535
CiliaryGanglion54.7
CingulateCortex657.45
Colorectaladenocarcinoma73.65
DorsalRootGanglion79
FetalThyroid278.35
Fetalbrain866.2
Fetalliver25.8
Fetallung353.4
GlobusPallidus205.9
Heart119.2
Hypothalamus1013.2
Kidney61.2
Leukemia_chronicMyelogenousK-56220.8
Leukemia_promyelocytic-HL-6021.35
Leukemialymphoblastic(MOLT-4)29.35
Liver125.25
Lung837.2
Lymphnode46.6
Lymphoma_burkitts(Daudi)168.3
Lymphoma_burkitts(Raji)67.35
MedullaOblongata451.05
OccipitalLobe692.3
OlfactoryBulb401.05
Ovary97.9
Pancreas51.65
PancreaticIslet140.1
ParietalLobe415.4
Pituitary243.1
Placenta216
Pons253.3
PrefrontalCortex2087.4
Prostate340.25
Salivarygland63.65
SkeletalMuscle20.7
Skin69.8
SmoothMuscle210.6
Spinalcord1032.85
SubthalamicNucleus370.85
SuperiorCervicalGanglion105.25
TemporalLobe346.9
Testis110.15
TestisGermCell126.75
TestisIntersitial73
TestisLeydigCell83.75
TestisSeminiferousTubule81.35
Thalamus570.1
Thymus82.7
Thyroid493.25
Tongue99.75
Tonsil38.75
Trachea179.85
TrigeminalGanglion73.1
Uterus289.3
UterusCorpus174.2
WholeBlood16.7
Wholebrain1006.55
colon76.65
pineal_day2167.04
pineal_night1897.1
retina1532.45
small_intestine60.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1706_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.77 ± 1.07
Basal Forebrain2.28 ± 0.25
Basal Part of Pons1.98 ± 0.41
Cerebellar Cortex2.45 ± 0.76
Cerebellar Nuclei2.64 ± 0.81
Claustrum3.09 ± 0.78
Epithalamus2.21 ± 0.76
Frontal Lobe2.12 ± 0.64
Globus Pallidus2.82 ± 0.45
Hypothalamus2.26 ± 0.68
Insula2.24 ± 0.49
Limbic Lobe2.32 ± 0.63
Mesencephalon2.51 ± 0.69
Myelencephalon2.31 ± 0.64
Occipital Lobe2.6 ± 0.74
Parietal Lobe2.31 ± 0.74
Pontine Tegmentum2.39 ± 0.77
Striatum2.28 ± 0.6
Subthalamus2.45 ± 0.67
Temporal Lobe2.23 ± 0.69
Thalamus2.26 ± 0.59
White Matter2.69 ± 0.35
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pcdhga6CBCerebellum3.43
4.26
Pcdhga6CTXCerebral cortex0.95
1.17
Pcdhga6HIPHippocampal region2.32
2.68
Pcdhga6HPFHippocampal formation1.65
2.05
Pcdhga6HYHypothalamus0.15
0.22
Pcdhga6LSXLateral septal complex0.2
0.57
Pcdhga6MBMidbrain0.36
0.56
Pcdhga6MYMedulla0.49
0.74
Pcdhga6OLFOlfactory bulb1.63
2.25
Pcdhga6PPons0.38
0.82
Pcdhga6PALPallidum0.04
0.02
Pcdhga6RHPRetrohippocampal region0.63
1.14
Pcdhga6sAMYStriatum-like amygdalar nuclei0.18
0.29
Pcdhga6STRStriatum0.28
0.36
Pcdhga6STRdStriatum dorsal region0.27
0.32
Pcdhga6STRvStriatum ventral region0.35
0.38
Pcdhga6THThalamus0.39
0.36
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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