AutismKB 2.0

Annotation Detail for PCDHA13


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Basic Information Top
Gene Symbol:PCDHA13 ( CNR5,CNRN5,CNRS5,CRNR5,PCDH-ALPHA13 )
Gene Full Name: protocadherin alpha 13
Band: 5q31.3
Quick LinksEntrez ID:56136; OMIM: 606319; Uniprot ID:PCDAD_HUMAN; ENSEMBL ID: ENSG00000081842,ENSG00000239389,ENSG00000243232; HGNC ID: 8667
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210674_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.2
Adipocyte6.8
AdrenalCortex7.9
Adrenalgland6.15
Amygdala216.2
Appendix7.6
AtrioventricularNode11.55
BDCA4+_DentriticCells6.4
Bonemarrow7.25
BronchialEpithelialCells6.4
CD105+_Endothelial6.55
CD14+_Monocytes6.9
CD19+_BCells(neg._sel.)6.95
CD33+_Myeloid7.95
CD34+7.95
CD4+_Tcells6.5
CD56+_NKCells7.3
CD71+_EarlyErythroid6.45
CD8+_Tcells5.85
CardiacMyocytes10.25
Caudatenucleus45.5
Cerebellum50.15
CerebellumPeduncles84.7
CiliaryGanglion13.15
CingulateCortex53.15
Colorectaladenocarcinoma6.7
DorsalRootGanglion11.75
FetalThyroid6.45
Fetalbrain413.55
Fetalliver6.1
Fetallung5.5
GlobusPallidus24.5
Heart10.25
Hypothalamus45.55
Kidney6.1
Leukemia_chronicMyelogenousK-5626.1
Leukemia_promyelocytic-HL-605.9
Leukemialymphoblastic(MOLT-4)5
Liver9.8
Lung7.65
Lymphnode5.6
Lymphoma_burkitts(Daudi)9.15
Lymphoma_burkitts(Raji)10.2
MedullaOblongata24.3
OccipitalLobe53.65
OlfactoryBulb5.55
Ovary4.75
Pancreas5.45
PancreaticIslet8.95
ParietalLobe23.7
Pituitary40.1
Placenta6.6
Pons11.85
PrefrontalCortex61.5
Prostate7.8
Salivarygland5.45
SkeletalMuscle9.05
Skin6.5
SmoothMuscle7.25
Spinalcord37.85
SubthalamicNucleus52.95
SuperiorCervicalGanglion11.85
TemporalLobe23.4
Testis7.65
TestisGermCell7.15
TestisIntersitial6.25
TestisLeydigCell6.75
TestisSeminiferousTubule5.8
Thalamus39.1
Thymus5
Thyroid10.35
Tongue7.35
Tonsil6.85
Trachea5.65
TrigeminalGanglion19.25
Uterus6.45
UterusCorpus6.9
WholeBlood7.1
Wholebrain94.15
colon6.45
pineal_day142.4
pineal_night150.78
retina23.525
small_intestine6.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1723_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.94 ± 0.91
Basal Forebrain2.71 ± 0.65
Basal Part of Pons2.31 ± 0.41
Cerebellar Cortex2.97 ± 0.52
Cerebellar Nuclei3.17 ± 0.62
Claustrum3.27 ± 0.77
Epithalamus2.36 ± 0.64
Frontal Lobe2.48 ± 0.76
Globus Pallidus2.31 ± 0.64
Hypothalamus2.67 ± 0.76
Insula2.44 ± 0.67
Limbic Lobe2.63 ± 0.69
Mesencephalon2.78 ± 0.73
Myelencephalon2.64 ± 0.7
Occipital Lobe2.83 ± 0.8
Parietal Lobe2.55 ± 0.8
Pontine Tegmentum2.68 ± 0.74
Striatum2.45 ± 0.81
Subthalamus2.6 ± 0.67
Temporal Lobe2.66 ± 0.71
Thalamus2.6 ± 0.65
White Matter2.58 ± 0.45
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Pcdha12CBCerebellum1.67
1.69
Pcdha12CTXCerebral cortex0.78
0.68
Pcdha12HIPHippocampal region2.31
1.95
Pcdha12HPFHippocampal formation1.62
1.39
Pcdha12HYHypothalamus0.1
0.07
Pcdha12LSXLateral septal complex0.19
0.14
Pcdha12MBMidbrain0.21
0.27
Pcdha12MYMedulla0.52
0.48
Pcdha12OLFOlfactory bulb0.91
0.74
Pcdha12PPons0.22
0.2
Pcdha12PALPallidum0.11
0.1
Pcdha12RHPRetrohippocampal region0.56
0.66
Pcdha12sAMYStriatum-like amygdalar nuclei0.35
0.41
Pcdha12STRStriatum0.16
0.18
Pcdha12STRdStriatum dorsal region0.14
0.19
Pcdha12STRvStriatum ventral region0.13
0.1
Pcdha12THThalamus0.75
0.63
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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