Annotation Detail for NDNL2
Basic Information Top
| Gene Symbol: | NDNL2 ( HCA4,MAGEG1,MAGEL3,NSE3,NSMCE3 ) |
|---|---|
| Gene Full Name: | necdin-like 2 |
| Band: | 15q13.1 |
| Quick Links | Entrez ID:56160; OMIM: 608243; Uniprot ID:MAGG1_HUMAN; ENSEMBL ID: ENSG00000185115; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.728271
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 4 / 55556 | 71 |  |
| adult | 40 / 1939121 | 20 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 69 / 3360307 | 20 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 15 / 125680 | 119 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 16 / 1100989 | 14 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 8 / 211054 | 37 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 2 / 330442 | 6 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P124973
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.83 ± 0.51 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.85 ± 0.22 | |
| Basal Part of Pons | 5.35 ± 0.22 | |
| Cerebellar Cortex | 5.03 ± 0.52 | |
| Cerebellar Nuclei | 5.31 ± 0.63 | |
| Claustrum | 4.72 ± 0.63 | |
| Epithalamus | 4.83 ± 0.69 | |
| Frontal Lobe | 5.11 ± 0.45 | |
| Globus Pallidus | 4.98 ± 0.57 | |
| Hypothalamus | 5.11 ± 0.64 | |
| Insula | 5.24 ± 0.37 | |
| Limbic Lobe | 5.28 ± 0.46 | |
| Mesencephalon | 4.94 ± 0.53 | |
| Myelencephalon | 5.01 ± 0.52 | |
| Occipital Lobe | 5.26 ± 0.42 | |
| Parietal Lobe | 5.08 ± 0.41 | |
| Pontine Tegmentum | 5.09 ± 0.44 | |
| Striatum | 4.87 ± 0.5 | |
| Subthalamus | 5.44 ± 0.59 | |
| Temporal Lobe | 5.02 ± 0.47 | |
| Thalamus | 5.06 ± 0.38 | |
| White Matter | 4.45 ± 0.47 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ndnl2 | CB | Cerebellum | 6.5 | |
| 7.7 | | |||
| Ndnl2 | CTX | Cerebral cortex | 25.77 | |
| 20.36 | | |||
| Ndnl2 | HIP | Hippocampal region | 30 | |
| 48.93 | | |||
| Ndnl2 | HPF | Hippocampal formation | 31.49 | |
| 40.27 | | |||
| Ndnl2 | HY | Hypothalamus | 5.14 | |
| 5.89 | | |||
| Ndnl2 | LSX | Lateral septal complex | 2.85 | |
| 1.9 | | |||
| Ndnl2 | MB | Midbrain | 6.34 | |
| 6.61 | | |||
| Ndnl2 | MY | Medulla | 20.29 | |
| 24.44 | | |||
| Ndnl2 | OLF | Olfactory bulb | 24.53 | |
| 21.44 | | |||
| Ndnl2 | P | Pons | 7.73 | |
| 9.18 | | |||
| Ndnl2 | PAL | Pallidum | 10.94 | |
| 11.39 | | |||
| Ndnl2 | RHP | Retrohippocampal region | 34.96 | |
| 29.87 | | |||
| Ndnl2 | sAMY | Striatum-like amygdalar nuclei | 13.75 | |
| 11.59 | | |||
| Ndnl2 | STR | Striatum | 8.12 | |
| 6.65 | | |||
| Ndnl2 | STRd | Striatum dorsal region | 6.87 | |
| 5.52 | | |||
| Ndnl2 | STRv | Striatum ventral region | 11.93 | |
| 9.72 | | |||
| Ndnl2 | TH | Thalamus | 12.58 | |
| 14.12 | |