Annotation Detail for SUSD2
Basic Information Top
| Gene Symbol: | SUSD2 ( BK65A6.2,FLJ22778 ) |
|---|---|
| Gene Full Name: | sushi domain containing 2 |
| Band: | 22q11.23 |
| Quick Links | Entrez ID:56241; OMIM: NA; Uniprot ID:SUSD2_HUMAN; ENSEMBL ID: ENSG00000099994; HGNC ID: 30667 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.131819
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 55 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 |  |
| colorectal tumor | 9 / 114246 | 78 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 11 / 97250 | 113 | |
| normal | 136 / 3360307 | 40 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 10 / 102680 | 97 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 43 / 1100989 | 39 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 13 / 149255 | 87 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 0 / 89626 | 0 | |
| intestine | 13 / 234472 | 55 | |
| kidney | 26 / 211777 | 122 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 35 / 336974 | 103 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 5 / 330442 | 15 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 6 / 52413 | 114 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_10465_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.99 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.86 ± 0.39 | |
| Basal Part of Pons | 2.27 ± 0.31 | |
| Cerebellar Cortex | 2.98 ± 0.91 | |
| Cerebellar Nuclei | 2.88 ± 0.86 | |
| Claustrum | 3.7 ± 0.96 | |
| Epithalamus | 2.53 ± 0.73 | |
| Frontal Lobe | 2.78 ± 0.84 | |
| Globus Pallidus | 3.28 ± 0.8 | |
| Hypothalamus | 3.44 ± 0.77 | |
| Insula | 2.51 ± 0.52 | |
| Limbic Lobe | 2.69 ± 0.84 | |
| Mesencephalon | 2.86 ± 0.93 | |
| Myelencephalon | 2.88 ± 0.82 | |
| Occipital Lobe | 2.97 ± 1.05 | |
| Parietal Lobe | 2.75 ± 0.81 | |
| Pontine Tegmentum | 3.27 ± 0.95 | |
| Striatum | 3.18 ± 1.06 | |
| Subthalamus | 2.67 ± 0.73 | |
| Temporal Lobe | 2.72 ± 0.87 | |
| Thalamus | 3.31 ± 0.79 | |
| White Matter | 2.86 ± 0.41 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Susd2 | CB | Cerebellum | 32.27 | |
| 46.97 | | |||
| Susd2 | CTX | Cerebral cortex | 76.15 | |
| 59.97 | | |||
| Susd2 | HIP | Hippocampal region | 33.94 | |
| 41.49 | | |||
| Susd2 | HPF | Hippocampal formation | 41.25 | |
| 41.36 | | |||
| Susd2 | HY | Hypothalamus | 48.73 | |
| 29.68 | | |||
| Susd2 | LSX | Lateral septal complex | 57.71 | |
| 45.28 | | |||
| Susd2 | MB | Midbrain | 62.7 | |
| 51.17 | | |||
| Susd2 | MY | Medulla | 48.35 | |
| 48.03 | | |||
| Susd2 | OLF | Olfactory bulb | 74.57 | |
| 61.79 | | |||
| Susd2 | P | Pons | 43.66 | |
| 41.9 | | |||
| Susd2 | PAL | Pallidum | 36.76 | |
| 25.24 | | |||
| Susd2 | RHP | Retrohippocampal region | 52.63 | |
| 42.16 | | |||
| Susd2 | sAMY | Striatum-like amygdalar nuclei | 61.56 | |
| 37.37 | | |||
| Susd2 | STR | Striatum | 35.51 | |
| 21.23 | | |||
| Susd2 | STRd | Striatum dorsal region | 29.91 | |
| 17.26 | | |||
| Susd2 | STRv | Striatum ventral region | 46.41 | |
| 28.66 | | |||
| Susd2 | TH | Thalamus | 38.1 | |
| 26.6 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00002463 | 29 | 97 | 125 | FKDSIQTLGHVDSSGQVHCVSPLLYESGR | Peptide Atlas |