Annotation Detail for KCNQ5
Basic Information Top
| Gene Symbol: | KCNQ5 ( Kv7.5 ) |
|---|---|
| Gene Full Name: | potassium voltage-gated channel, KQT-like subfamily, member 5 |
| Band: | 6q13 |
| Quick Links | Entrez ID:56479; OMIM: 607357; Uniprot ID:KCNQ5_HUMAN; ENSEMBL ID: ENSG00000185760; HGNC ID: 6299 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.445324
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 10 / 564012 | 17 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 24 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 39 / 3360307 | 11 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 3 / 46356 | 64 |  |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 34 / 1100989 | 30 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_403_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.26 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.42 ± 0.52 | |
| Basal Part of Pons | 8.31 ± 0.27 | |
| Cerebellar Cortex | 5.13 ± 0.67 | |
| Cerebellar Nuclei | 5.49 ± 0.71 | |
| Claustrum | 7.35 ± 0.84 | |
| Epithalamus | 5.03 ± 1.22 | |
| Frontal Lobe | 6.2 ± 0.97 | |
| Globus Pallidus | 3.95 ± 2.23 | |
| Hypothalamus | 5.72 ± 0.67 | |
| Insula | 5.72 ± 1.04 | |
| Limbic Lobe | 6.86 ± 1.12 | |
| Mesencephalon | 5.79 ± 1.02 | |
| Myelencephalon | 6.23 ± 1.17 | |
| Occipital Lobe | 7.16 ± 0.8 | |
| Parietal Lobe | 6.84 ± 0.81 | |
| Pontine Tegmentum | 5.9 ± 0.81 | |
| Striatum | 7.35 ± 0.63 | |
| Subthalamus | 5.13 ± 0.68 | |
| Temporal Lobe | 6.15 ± 0.85 | |
| Thalamus | 5.08 ± 0.87 | |
| White Matter | 3.9 ± 1.42 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Kcnq5 | CB | Cerebellum | 15.07 | |
| 21.58 | | |||
| Kcnq5 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Kcnq5 | HIP | Hippocampal region | 46.88 | |
| 86.5 | | |||
| Kcnq5 | HPF | Hippocampal formation | 46.43 | |
| 64.88 | | |||
| Kcnq5 | HY | Hypothalamus | 12.85 | |
| 10.78 | | |||
| Kcnq5 | LSX | Lateral septal complex | 35.73 | |
| 32.26 | | |||
| Kcnq5 | MB | Midbrain | 11.91 | |
| 11.99 | | |||
| Kcnq5 | MY | Medulla | 18.72 | |
| 21.7 | | |||
| Kcnq5 | OLF | Olfactory bulb | 53.13 | |
| 55.21 | | |||
| Kcnq5 | P | Pons | 13.88 | |
| 14.53 | | |||
| Kcnq5 | PAL | Pallidum | 26.39 | |
| 25.93 | | |||
| Kcnq5 | RHP | Retrohippocampal region | 48.28 | |
| 42.85 | | |||
| Kcnq5 | sAMY | Striatum-like amygdalar nuclei | 33.43 | |
| 29.25 | | |||
| Kcnq5 | STR | Striatum | 89.96 | |
| 80.19 | | |||
| Kcnq5 | STRd | Striatum dorsal region | 97.28 | |
| 87.44 | | |||
| Kcnq5 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Kcnq5 | TH | Thalamus | 12.95 | |
| 12.55 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| KCNQ5_HUMAN_392 | 12 | 392 | 403 | MASPRGQSIKSR | PRIDE |
| PAp00001727 | 14 | 684 | 697 | DLSGSAQNSGCLSR | Peptide Atlas |