AutismKB 2.0

Annotation Detail for TMEM9B


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Basic Information Top
Gene Symbol:TMEM9B ( C11orf15 )
Gene Full Name: TMEM9 domain family, member B
Band: 11p15.4
Quick LinksEntrez ID:56674; OMIM: NA; Uniprot ID:TMM9B_HUMAN; ENSEMBL ID: ENSG00000175348; HGNC ID: 1168
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus25 / 56401244
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult106 / 193912154
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor8 / 11424670
esophageal tumor0 / 172900 
gastrointestinal tumor8 / 11936967
germ cell tumor6 / 26384522
glioma8 / 10688374
head and neck tumor6 / 13630244
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor3 / 9635931
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia7 / 9725071
normal197 / 336030758
ovarian tumor0 / 766820 
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland0 / 331970 
ascites1 / 4001524
bladder1 / 2975733
blood2 / 12347816
bone1 / 7165513
bone marrow0 / 488010 
brain72 / 110098965
cervix3 / 4817162
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye15 / 21105471
heart6 / 8962666
intestine17 / 23447272
kidney12 / 21177756
larynx1 / 2414541
liver3 / 20774314
lung11 / 33697432
lymph0 / 442700 
lymph node1 / 9161010
mammary gland7 / 15327145
mouth2 / 6705229
muscle4 / 10771537
nerve0 / 157680 
ovary2 / 10205119
pancreas15 / 21481269
parathyroid4 / 20539194
pharynx0 / 413280 
pituitary gland3 / 16585180
placenta32 / 280825113
prostate6 / 18934531
salivary gland1 / 2015549
skin8 / 21057437
spleen2 / 5395237
stomach8 / 9661982
testis19 / 33044257
thymus1 / 8113112
thyroid3 / 4747363
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus11 / 23287847
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218065_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts124.4
Adipocyte110.25
AdrenalCortex48.35
Adrenalgland82.5
Amygdala202.85
Appendix98.8
AtrioventricularNode59.6
BDCA4+_DentriticCells249.35
Bonemarrow96.45
BronchialEpithelialCells172.15
CD105+_Endothelial296.55
CD14+_Monocytes238.85
CD19+_BCells(neg._sel.)386.85
CD33+_Myeloid273.2
CD34+93.7
CD4+_Tcells161.55
CD56+_NKCells342.65
CD71+_EarlyErythroid587.4
CD8+_Tcells177.65
CardiacMyocytes141.2
Caudatenucleus111.15
Cerebellum69.9
CerebellumPeduncles116.15
CiliaryGanglion30.2
CingulateCortex106.05
Colorectaladenocarcinoma111
DorsalRootGanglion71.25
FetalThyroid169.2
Fetalbrain167.45
Fetalliver84.05
Fetallung72.95
GlobusPallidus58.5
Heart45.1
Hypothalamus218.5
Kidney52.3
Leukemia_chronicMyelogenousK-56254.55
Leukemia_promyelocytic-HL-6078.9
Leukemialymphoblastic(MOLT-4)57.4
Liver53.1
Lung219.9
Lymphnode90.2
Lymphoma_burkitts(Daudi)98.75
Lymphoma_burkitts(Raji)119.1
MedullaOblongata108.85
OccipitalLobe123.8
OlfactoryBulb139.6
Ovary48.2
Pancreas72.7
PancreaticIslet195.15
ParietalLobe143.9
Pituitary164.1
Placenta338.65
Pons76.05
PrefrontalCortex172.25
Prostate277.3
Salivarygland116.15
SkeletalMuscle31.3
Skin71.7
SmoothMuscle141.45
Spinalcord179.65
SubthalamicNucleus55.7
SuperiorCervicalGanglion68.85
TemporalLobe72.05
Testis68.3
TestisGermCell96.3
TestisIntersitial82.5
TestisLeydigCell77.1
TestisSeminiferousTubule58.85
Thalamus118.8
Thymus83.15
Thyroid475.8
Tongue97.45
Tonsil100.1
Trachea134.5
TrigeminalGanglion72.1
Uterus76.75
UterusCorpus52.4
WholeBlood239.15
Wholebrain185.2
colon304.65
pineal_day471.12
pineal_night460.78
retina261.75
small_intestine190.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P398319
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.23 ± 0.45
Basal Forebrain4.73 ± 0.6
Basal Part of Pons5.11 ± 0.37
Cerebellar Cortex4.96 ± 0.38
Cerebellar Nuclei4.83 ± 0.34
Claustrum4.68 ± 0.88
Epithalamus5.13 ± 0.37
Frontal Lobe5.16 ± 0.41
Globus Pallidus5.93 ± 0.27
Hypothalamus4.94 ± 0.76
Insula5.14 ± 0.44
Limbic Lobe4.85 ± 0.58
Mesencephalon4.98 ± 0.72
Myelencephalon5.05 ± 0.54
Occipital Lobe4.73 ± 0.4
Parietal Lobe4.99 ± 0.61
Pontine Tegmentum5.16 ± 0.41
Striatum4.87 ± 0.42
Subthalamus5.07 ± 0.79
Temporal Lobe5.04 ± 0.52
Thalamus5.16 ± 0.46
White Matter5.69 ± 0.36
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00004862 29 133 161 LFGHAQLIQSDDDIGDHQPFANAHDVLAR Peptide Atlas
TMM9B_HUMAN_34 8 34 41 AKNFEDVR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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