AutismKB 2.0

Annotation Detail for NRIP3


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Basic Information Top
Gene Symbol:NRIP3 ( C11orf14,NY-SAR-105 )
Gene Full Name: nuclear receptor interacting protein 3
Band: 11p15.4
Quick LinksEntrez ID:56675; OMIM: 613125; Uniprot ID:NRIP3_HUMAN; ENSEMBL ID: ENSG00000175352; HGNC ID: 1167
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus4 / 5640127
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult21 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor6 / 26384522
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal164 / 336030748
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood3 / 12347824
bone1 / 7165513
bone marrow0 / 488010 
brain130 / 1100989118
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine0 / 2344720 
kidney3 / 21177714
larynx0 / 241450 
liver0 / 2077430 
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary0 / 1020510 
pancreas1 / 2148124
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin4 / 21057418
spleen0 / 539520 
stomach0 / 966190 
testis45 / 330442136
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219557_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8
Adipocyte6.35
AdrenalCortex9.1
Adrenalgland8.15
Amygdala160.3
Appendix9.05
AtrioventricularNode7.4
BDCA4+_DentriticCells7.65
Bonemarrow8.65
BronchialEpithelialCells7.9
CD105+_Endothelial7.45
CD14+_Monocytes7.45
CD19+_BCells(neg._sel.)7.65
CD33+_Myeloid10.1
CD34+9.1
CD4+_Tcells7.75
CD56+_NKCells8.15
CD71+_EarlyErythroid7.5
CD8+_Tcells6.35
CardiacMyocytes10.9
Caudatenucleus11.35
Cerebellum117.6
CerebellumPeduncles77.8
CiliaryGanglion10.75
CingulateCortex55.1
Colorectaladenocarcinoma11.4
DorsalRootGanglion7.05
FetalThyroid7.6
Fetalbrain11.35
Fetalliver7.55
Fetallung6.2
GlobusPallidus19.9
Heart9.45
Hypothalamus75.45
Kidney7
Leukemia_chronicMyelogenousK-5627.7
Leukemia_promyelocytic-HL-606.5
Leukemialymphoblastic(MOLT-4)6.35
Liver10.5
Lung8.6
Lymphnode7.25
Lymphoma_burkitts(Daudi)10.85
Lymphoma_burkitts(Raji)10.95
MedullaOblongata29.9
OccipitalLobe41.3
OlfactoryBulb6.65
Ovary5.95
Pancreas6.6
PancreaticIslet8.4
ParietalLobe17.65
Pituitary9.5
Placenta7.4
Pons12.05
PrefrontalCortex42.3
Prostate9.35
Salivarygland6.35
SkeletalMuscle9.2
Skin6.8
SmoothMuscle9.15
Spinalcord9.55
SubthalamicNucleus27.2
SuperiorCervicalGanglion12.6
TemporalLobe54.7
Testis176.2
TestisGermCell23.6
TestisIntersitial59.55
TestisLeydigCell20.65
TestisSeminiferousTubule29.7
Thalamus52
Thymus7.1
Thyroid9.7
Tongue8.75
Tonsil7.3
Trachea6.95
TrigeminalGanglion8.85
Uterus7.5
UterusCorpus9.3
WholeBlood7.6
Wholebrain283.85
colon8.3
pineal_day17.34
pineal_night17.96
retina16.675
small_intestine8.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P486693
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.9 ± 0.88
Basal Forebrain3.39 ± 0.35
Basal Part of Pons3.64 ± 0.47
Cerebellar Cortex4.7 ± 0.36
Cerebellar Nuclei3.88 ± 0.39
Claustrum3.31 ± 0.76
Epithalamus3.35 ± 0.73
Frontal Lobe4.39 ± 0.62
Globus Pallidus2.62 ± 0.74
Hypothalamus3.58 ± 0.6
Insula4.41 ± 0.49
Limbic Lobe4.67 ± 0.99
Mesencephalon4.08 ± 0.77
Myelencephalon4.08 ± 0.71
Occipital Lobe3.94 ± 0.83
Parietal Lobe4.24 ± 0.87
Pontine Tegmentum4.28 ± 0.72
Striatum3.3 ± 0.93
Subthalamus3.92 ± 0.8
Temporal Lobe4.34 ± 0.62
Thalamus4.2 ± 0.53
White Matter1.43 ± 1.1
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Nrip3CBCerebellum4.71
6.26
Nrip3CTXCerebral cortex17.69
19.51
Nrip3HIPHippocampal region35.48
66.5
Nrip3HPFHippocampal formation28.01
43.72
Nrip3HYHypothalamus3.16
3.37
Nrip3LSXLateral septal complex4.65
4.68
Nrip3MBMidbrain6.86
10.04
Nrip3MYMedulla9.66
17.04
Nrip3OLFOlfactory bulb26.85
39.68
Nrip3PPons8.26
12.77
Nrip3PALPallidum12.68
16.54
Nrip3RHPRetrohippocampal region18.11
19.15
Nrip3sAMYStriatum-like amygdalar nuclei7.23
8.84
Nrip3STRStriatum4.33
4.92
Nrip3STRdStriatum dorsal region2.65
3.13
Nrip3STRvStriatum ventral region6.69
6.91
Nrip3THThalamus50.17
59.03
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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