AutismKB 2.0

Annotation Detail for ZC3HAV1


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Basic Information Top
Gene Symbol:ZC3HAV1 ( DKFZp686F2052,DKFZp686H1869,DKFZp686O19171,FLB6421,FLJ13288,MGC48898,PARP13,ZAP,ZC3H2,ZC3HDC2 )
Gene Full Name: zinc finger CCCH-type, antiviral 1
Band: 7q34
Quick LinksEntrez ID:56829; OMIM: 607312; Uniprot ID:ZCCHV_HUMAN; ENSEMBL ID: ENSG00000105939; HGNC ID: 23721
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus51 / 56401290
neonate1 / 3109732
infant1 / 2362042
juvenile1 / 5555617
adult129 / 193912166
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor10 / 94178106
cervical tumor3 / 3436687
chondrosarcoma10 / 82823120
colorectal tumor9 / 11424678
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor11 / 26384541
glioma13 / 106883121
head and neck tumor9 / 13630266
kidney tumor2 / 6895929
leukemia2 / 9584220
liver tumor4 / 9635941
lung tumor3 / 10312729
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal194 / 336030757
ovarian tumor7 / 7668291
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer7 / 10268068
retinoblastoma1 / 4635621
skin tumor6 / 12494948
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites2 / 4001549
bladder3 / 29757100
blood8 / 12347864
bone11 / 71655153
bone marrow5 / 48801102
brain30 / 110098927
cervix3 / 4817162
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye14 / 21105466
heart8 / 8962689
intestine16 / 23447268
kidney11 / 21177751
larynx0 / 241450 
liver10 / 20774348
lung21 / 33697462
lymph0 / 442700 
lymph node11 / 91610120
mammary gland11 / 15327171
mouth3 / 6705244
muscle2 / 10771518
nerve3 / 15768190
ovary7 / 10205168
pancreas8 / 21481237
parathyroid2 / 2053997
pharynx3 / 4132872
pituitary gland1 / 1658560
placenta13 / 28082546
prostate8 / 18934542
salivary gland0 / 201550 
skin12 / 21057456
spleen3 / 5395255
stomach2 / 9661920
testis13 / 33044239
thymus10 / 81131123
thyroid5 / 47473105
tonsil0 / 169990 
trachea10 / 52413190
umbilical cord0 / 136800 
uterus10 / 23287842
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 213051_at
Cell line Expression level Expression bar
721_B_lymphoblasts72.35
Adipocyte16
AdrenalCortex6.05
Adrenalgland14.1
Amygdala5.9
Appendix6.45
AtrioventricularNode4.85
BDCA4+_DentriticCells97.95
Bonemarrow5.85
BronchialEpithelialCells7.85
CD105+_Endothelial104.05
CD14+_Monocytes25.05
CD19+_BCells(neg._sel.)142.3
CD33+_Myeloid159.55
CD34+179.6
CD4+_Tcells511.95
CD56+_NKCells198.35
CD71+_EarlyErythroid77
CD8+_Tcells367.6
CardiacMyocytes9.35
Caudatenucleus5.1
Cerebellum4.55
CerebellumPeduncles6.6
CiliaryGanglion5.25
CingulateCortex5.7
Colorectaladenocarcinoma6.3
DorsalRootGanglion5.45
FetalThyroid8.2
Fetalbrain5.85
Fetalliver7.1
Fetallung4.9
GlobusPallidus3.55
Heart7.3
Hypothalamus6.2
Kidney4.8
Leukemia_chronicMyelogenousK-5627.25
Leukemia_promyelocytic-HL-605.3
Leukemialymphoblastic(MOLT-4)36.85
Liver7.75
Lung6.7
Lymphnode7.15
Lymphoma_burkitts(Daudi)27.45
Lymphoma_burkitts(Raji)8.3
MedullaOblongata5.35
OccipitalLobe5.25
OlfactoryBulb12.1
Ovary4
Pancreas5.2
PancreaticIslet7.5
ParietalLobe5.9
Pituitary11.4
Placenta6.65
Pons5.55
PrefrontalCortex7.5
Prostate13.35
Salivarygland8.7
SkeletalMuscle6.45
Skin4.25
SmoothMuscle18.45
Spinalcord6.3
SubthalamicNucleus5.25
SuperiorCervicalGanglion6.5
TemporalLobe5.35
Testis5.05
TestisGermCell15.6
TestisIntersitial4.9
TestisLeydigCell5.75
TestisSeminiferousTubule5
Thalamus5.7
Thymus17.1
Thyroid7.1
Tongue5.65
Tonsil21.3
Trachea5.15
TrigeminalGanglion5.65
Uterus15.1
UterusCorpus5.3
WholeBlood92.35
Wholebrain4.9
colon6.35
pineal_day20.98
pineal_night15.56
retina7.425
small_intestine13.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P341938
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.38 ± 0.66
Basal Forebrain4.43 ± 0.35
Basal Part of Pons3.38 ± 0.46
Cerebellar Cortex3.32 ± 0.54
Cerebellar Nuclei3.55 ± 0.79
Claustrum4.28 ± 0.75
Epithalamus4.9 ± 0.41
Frontal Lobe3.93 ± 0.64
Globus Pallidus5.24 ± 0.42
Hypothalamus4.62 ± 0.71
Insula3.89 ± 0.57
Limbic Lobe3.78 ± 0.67
Mesencephalon4.26 ± 0.54
Myelencephalon4.13 ± 0.66
Occipital Lobe3.88 ± 0.69
Parietal Lobe3.81 ± 0.71
Pontine Tegmentum4.13 ± 0.74
Striatum4.62 ± 0.52
Subthalamus3.48 ± 0.28
Temporal Lobe3.94 ± 0.7
Thalamus4.13 ± 0.58
White Matter4.92 ± 0.4
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Zc3hav1CBCerebellum34.45
50.27
Zc3hav1CTXCerebral cortex20.91
17.81
Zc3hav1HIPHippocampal region30.61
41.2
Zc3hav1HPFHippocampal formation35.64
40.37
Zc3hav1HYHypothalamus5.35
5.58
Zc3hav1LSXLateral septal complex2.77
2.98
Zc3hav1MBMidbrain8.17
11.18
Zc3hav1MYMedulla17.89
22.58
Zc3hav1OLFOlfactory bulb27.56
25.65
Zc3hav1PPons11.25
16.22
Zc3hav1PALPallidum5.29
5.4
Zc3hav1RHPRetrohippocampal region47.24
41
Zc3hav1sAMYStriatum-like amygdalar nuclei8.16
6.59
Zc3hav1STRStriatum6.73
5.76
Zc3hav1STRdStriatum dorsal region6.11
5.22
Zc3hav1STRvStriatum ventral region10.28
8.32
Zc3hav1THThalamus8.48
9.42
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00002051 19 204 222 EHGLNPDVVQNIQDICNSK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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