Annotation Detail for RAD18
Basic Information Top
| Gene Symbol: | RAD18 ( RNF73 ) |
|---|---|
| Gene Full Name: | RAD18 homolog (S. cerevisiae) |
| Band: | 3p25.3 |
| Quick Links | Entrez ID:56852; OMIM: 605256; Uniprot ID:RAD18_HUMAN; ENSEMBL ID: ENSG00000070950; HGNC ID: 18278 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.375684
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 6 / 62319 | 96 | |
| fetus | 27 / 564012 | 47 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 5 / 55556 | 89 | |
| adult | 57 / 1939121 | 29 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 92 / 3360307 | 27 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 10 / 125680 | 79 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 2 / 29757 | 67 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 14 / 1100989 | 12 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 1 / 211054 | 4 | |
| heart | 2 / 89626 | 22 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 4 / 210574 | 18 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 4 / 96619 | 41 | |
| testis | 12 / 330442 | 36 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 9 / 51780 | 173 | |
Microarray in - Probe name: CUST_14495_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.34 ± 0.45 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.86 ± 0.46 | |
| Basal Part of Pons | 3.97 ± 0.42 | |
| Cerebellar Cortex | 3.83 ± 0.46 | |
| Cerebellar Nuclei | 4.12 ± 0.5 | |
| Claustrum | 4.13 ± 0.67 | |
| Epithalamus | 3.45 ± 0.56 | |
| Frontal Lobe | 3.84 ± 0.52 | |
| Globus Pallidus | 4.13 ± 0.38 | |
| Hypothalamus | 3.63 ± 0.51 | |
| Insula | 4.07 ± 0.52 | |
| Limbic Lobe | 4.22 ± 0.5 | |
| Mesencephalon | 4.05 ± 0.64 | |
| Myelencephalon | 3.97 ± 0.54 | |
| Occipital Lobe | 4.11 ± 0.39 | |
| Parietal Lobe | 4.04 ± 0.57 | |
| Pontine Tegmentum | 4 ± 0.64 | |
| Striatum | 4.23 ± 0.82 | |
| Subthalamus | 4.34 ± 0.66 | |
| Temporal Lobe | 3.99 ± 0.51 | |
| Thalamus | 3.65 ± 0.53 | |
| White Matter | 3.71 ± 0.72 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rad18 | CB | Cerebellum | 8.76 | |
| 11.64 | | |||
| Rad18 | CTX | Cerebral cortex | 56.77 | |
| 49.51 | | |||
| Rad18 | HIP | Hippocampal region | 28.47 | |
| 40.12 | | |||
| Rad18 | HPF | Hippocampal formation | 29.85 | |
| 35.3 | | |||
| Rad18 | HY | Hypothalamus | 6.54 | |
| 6.44 | | |||
| Rad18 | LSX | Lateral septal complex | 9.81 | |
| 8.06 | | |||
| Rad18 | MB | Midbrain | 10.98 | |
| 13.92 | | |||
| Rad18 | MY | Medulla | 11.89 | |
| 20.06 | | |||
| Rad18 | OLF | Olfactory bulb | 32.94 | |
| 30.12 | | |||
| Rad18 | P | Pons | 11.98 | |
| 19.1 | | |||
| Rad18 | PAL | Pallidum | 10.52 | |
| 11.43 | | |||
| Rad18 | RHP | Retrohippocampal region | 33.05 | |
| 28.78 | | |||
| Rad18 | sAMY | Striatum-like amygdalar nuclei | 27.04 | |
| 21.55 | | |||
| Rad18 | STR | Striatum | 41.24 | |
| 33.16 | | |||
| Rad18 | STRd | Striatum dorsal region | 51.35 | |
| 41.86 | | |||
| Rad18 | STRv | Striatum ventral region | 27.93 | |
| 21.76 | | |||
| Rad18 | TH | Thalamus | 14.99 | |
| 17.12 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00003496 | 18 | 278 | 295 | HQEFVHMYNAQCDALHPK | Peptide Atlas |
| RAD18_HUMAN_407 | 11 | 407 | 417 | LDSPEELEPDR | PRIDE |
| RAD18_HUMAN_463 | 11 | 463 | 473 | NDLQDTEISPR | PRIDE |
| RAD18_HUMAN_90 | 21 | 90 | 110 | NHLLQFALESPAKSPASSSSK | PRIDE |