Annotation Detail for UBQLN4
Basic Information Top
| Gene Symbol: | UBQLN4 ( A1U,C1orf6,CIP75,UBIN ) |
|---|---|
| Gene Full Name: | ubiquilin 4 |
| Band: | 1q22 |
| Quick Links | Entrez ID:56893; OMIM: 605440; Uniprot ID:UBQL4_HUMAN; ENSEMBL ID: ENSG00000160803; HGNC ID: 1237 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.283739
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 36 / 564012 | 63 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 84 / 1939121 | 43 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 13 / 119369 | 108 | |
| germ cell tumor | 23 / 263845 | 87 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 9 / 96359 | 93 | |
| lung tumor | 11 / 103127 | 106 | |
| lymphoma | 12 / 71755 | 167 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 114 / 3360307 | 33 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 9 / 125680 | 71 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 13 / 125191 | 103 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 3 / 29757 | 100 | |
| blood | 7 / 123478 | 56 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 42 / 1100989 | 38 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 10 / 89626 | 111 | |
| intestine | 15 / 234472 | 63 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 10 / 207743 | 48 | |
| lung | 17 / 336974 | 50 | |
| lymph | 9 / 44270 | 203 |  |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 10 / 153271 | 65 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 10 / 107715 | 92 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 3 / 20155 | 148 | |
| skin | 7 / 210574 | 33 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 8 / 96619 | 82 | |
| testis | 17 / 330442 | 51 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_5053_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4 ± 0.48 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.38 ± 0.26 | |
| Basal Part of Pons | 3.63 ± 0.59 | |
| Cerebellar Cortex | 3.5 ± 0.47 | |
| Cerebellar Nuclei | 3.46 ± 0.54 | |
| Claustrum | 3.6 ± 0.66 | |
| Epithalamus | 3.3 ± 0.62 | |
| Frontal Lobe | 3.58 ± 0.48 | |
| Globus Pallidus | 3.62 ± 0.8 | |
| Hypothalamus | 3.65 ± 0.52 | |
| Insula | 3.39 ± 0.45 | |
| Limbic Lobe | 3.73 ± 0.52 | |
| Mesencephalon | 3.66 ± 0.66 | |
| Myelencephalon | 3.68 ± 0.56 | |
| Occipital Lobe | 3.8 ± 0.6 | |
| Parietal Lobe | 3.73 ± 0.51 | |
| Pontine Tegmentum | 3.65 ± 0.58 | |
| Striatum | 4.31 ± 0.45 | |
| Subthalamus | 3.73 ± 0.13 | |
| Temporal Lobe | 3.66 ± 0.54 | |
| Thalamus | 3.6 ± 0.66 | |
| White Matter | 3.16 ± 0.62 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ubqln4 | CB | Cerebellum | 27.17 | |
| 34.81 | | |||
| Ubqln4 | CTX | Cerebral cortex | 96.12 | |
| 81.12 | | |||
| Ubqln4 | HIP | Hippocampal region | 52.77 | |
| 81.73 | | |||
| Ubqln4 | HPF | Hippocampal formation | 59.23 | |
| 71.52 | | |||
| Ubqln4 | HY | Hypothalamus | 35.48 | |
| 29.2 | | |||
| Ubqln4 | LSX | Lateral septal complex | 31.29 | |
| 22.69 | | |||
| Ubqln4 | MB | Midbrain | 43.23 | |
| 41.65 | | |||
| Ubqln4 | MY | Medulla | 44.55 | |
| 54.07 | | |||
| Ubqln4 | OLF | Olfactory bulb | 79.42 | |
| 82.88 | | |||
| Ubqln4 | P | Pons | 40.49 | |
| 45.98 | | |||
| Ubqln4 | PAL | Pallidum | 44.64 | |
| 47.05 | | |||
| Ubqln4 | RHP | Retrohippocampal region | 69.64 | |
| 60.75 | | |||
| Ubqln4 | sAMY | Striatum-like amygdalar nuclei | 43.33 | |
| 34.66 | | |||
| Ubqln4 | STR | Striatum | 63.84 | |
| 49.87 | | |||
| Ubqln4 | STRd | Striatum dorsal region | 69.01 | |
| 54.3 | | |||
| Ubqln4 | STRv | Striatum ventral region | 71.68 | |
| 54.58 | | |||
| Ubqln4 | TH | Thalamus | 55.67 | |
| 50.57 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00009816 | 10 | 22 | 31 | DKEEIVICDR | Peptide Atlas |
| UBQL4_HUMAN_217 | 15 | 217 | 231 | HMIMANPQMQQLMER | PRIDE |
| UBQL4_HUMAN_559 | 16 | 559 | 574 | FQQQLEQLNSMGFINR | PRIDE |