AutismKB 2.0

Annotation Detail for PRDM11


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Basic Information Top
Gene Symbol:PRDM11 ( PFM8 )
Gene Full Name: PR domain containing 11
Band: 11p11.2
Quick LinksEntrez ID:56981; OMIM: NA; Uniprot ID:PRD11_HUMAN; ENSEMBL ID: ENSG00000019485; HGNC ID: 13996
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult11 / 19391215
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal14 / 33603074
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain4 / 11009893
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine1 / 2344724
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate3 / 18934515
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220571_at
Cell line Expression level Expression bar
721_B_lymphoblasts30.7
Adipocyte27.45
AdrenalCortex28.35
Adrenalgland27.15
Amygdala29.15
Appendix30.2
AtrioventricularNode25.1
BDCA4+_DentriticCells20.85
Bonemarrow27.15
BronchialEpithelialCells26.95
CD105+_Endothelial27.1
CD14+_Monocytes29
CD19+_BCells(neg._sel.)24.95
CD33+_Myeloid18.35
CD34+9.2
CD4+_Tcells24.9
CD56+_NKCells12.3
CD71+_EarlyErythroid25.6
CD8+_Tcells18.9
CardiacMyocytes34.3
Caudatenucleus24.75
Cerebellum22.7
CerebellumPeduncles32.35
CiliaryGanglion24.35
CingulateCortex28.2
Colorectaladenocarcinoma27.25
DorsalRootGanglion35.95
FetalThyroid27.05
Fetalbrain27.9
Fetalliver23.75
Fetallung23.05
GlobusPallidus19.95
Heart35.6
Hypothalamus30.4
Kidney24.4
Leukemia_chronicMyelogenousK-56227.45
Leukemia_promyelocytic-HL-6024.45
Leukemialymphoblastic(MOLT-4)23.4
Liver36.1
Lung30.6
Lymphnode24.1
Lymphoma_burkitts(Daudi)41.25
Lymphoma_burkitts(Raji)38.2
MedullaOblongata25.5
OccipitalLobe24.8
OlfactoryBulb21.8
Ovary19.25
Pancreas22.1
PancreaticIslet29.4
ParietalLobe29.55
Pituitary32.35
Placenta28
Pons32.25
PrefrontalCortex34.45
Prostate33.3
Salivarygland21.9
SkeletalMuscle31.6
Skin23.95
SmoothMuscle31.5
Spinalcord30.7
SubthalamicNucleus25.1
SuperiorCervicalGanglion35.45
TemporalLobe27.6
Testis23.95
TestisGermCell23.05
TestisIntersitial23.05
TestisLeydigCell28.15
TestisSeminiferousTubule23.75
Thalamus27.95
Thymus22.05
Thyroid33.25
Tongue28.3
Tonsil26.9
Trachea23.1
TrigeminalGanglion28.45
Uterus22.75
UterusCorpus31.45
WholeBlood30.4
Wholebrain24
colon27.8
pineal_day28.92
pineal_night26.04
retina33.7
small_intestine26.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P9833
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.14 ± 0.44
Basal Forebrain4.27 ± 0.56
Basal Part of Pons4.13 ± 0.3
Cerebellar Cortex3.69 ± 0.45
Cerebellar Nuclei4.14 ± 0.47
Claustrum3.99 ± 0.75
Epithalamus3.81 ± 0.93
Frontal Lobe4.02 ± 0.5
Globus Pallidus3.85 ± 0.31
Hypothalamus3.94 ± 0.44
Insula4.08 ± 0.21
Limbic Lobe4.03 ± 0.55
Mesencephalon4.15 ± 0.59
Myelencephalon4.14 ± 0.58
Occipital Lobe4.43 ± 0.5
Parietal Lobe4.13 ± 0.46
Pontine Tegmentum4.06 ± 0.57
Striatum4.55 ± 0.55
Subthalamus3.98 ± 0.26
Temporal Lobe4.16 ± 0.5
Thalamus4.23 ± 0.42
White Matter3.29 ± 0.5
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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