AutismKB 2.0

Annotation Detail for C16orf62


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Basic Information Top
Gene Symbol:C16orf62 ( DKFZp313M0539,DKFZp434B0212,FLJ21040,MGC16824 )
Gene Full Name: chromosome 16 open reading frame 62
Band: 16p12.3
Quick LinksEntrez ID:57020; OMIM: NA; Uniprot ID:CP062_HUMAN; ENSEMBL ID: ENSG00000103544; HGNC ID: 24641
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst7 / 62319112
fetus41 / 56401272
neonate2 / 3109764
infant0 / 236200 
juvenile2 / 5555635
adult159 / 193912181
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor15 / 94178159
cervical tumor0 / 343660 
chondrosarcoma7 / 8282384
colorectal tumor10 / 11424687
esophageal tumor0 / 172900 
gastrointestinal tumor12 / 119369100
germ cell tumor33 / 263845125
glioma7 / 10688365
head and neck tumor27 / 136302198
kidney tumor3 / 6895943
leukemia4 / 9584241
liver tumor6 / 9635962
lung tumor7 / 10312767
lymphoma3 / 7175541
non-neoplasia5 / 9725051
normal223 / 336030766
ovarian tumor5 / 7668265
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer1 / 1026809
retinoblastoma3 / 4635664
skin tumor7 / 12494956
soft tissue/muscle tissue tumor11 / 12519187
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder1 / 2975733
blood2 / 12347816
bone5 / 7165569
bone marrow0 / 488010 
brain106 / 110098996
cervix1 / 4817120
connective tissue11 / 14925573
ear0 / 162120 
embryonic tissue16 / 21572274
esophagus0 / 202090 
eye11 / 21105452
heart4 / 8962644
intestine14 / 23447259
kidney11 / 21177751
larynx1 / 2414541
liver7 / 20774333
lung27 / 33697480
lymph1 / 4427022
lymph node9 / 9161098
mammary gland18 / 153271117
mouth17 / 67052253
muscle3 / 10771527
nerve2 / 15768126
ovary6 / 10205158
pancreas7 / 21481232
parathyroid4 / 20539194
pharynx4 / 4132896
pituitary gland0 / 165850 
placenta14 / 28082549
prostate6 / 18934531
salivary gland0 / 201550 
skin9 / 21057442
spleen0 / 539520 
stomach14 / 96619144
testis55 / 330442166
thymus16 / 81131197
thyroid10 / 47473210
tonsil0 / 169990 
trachea6 / 52413114
umbilical cord0 / 136800 
uterus14 / 23287860
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203173_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts35.05
Adipocyte14.55
AdrenalCortex13.15
Adrenalgland11.3
Amygdala14.45
Appendix10.8
AtrioventricularNode6.4
BDCA4+_DentriticCells29.85
Bonemarrow10.45
BronchialEpithelialCells18.7
CD105+_Endothelial19.1
CD14+_Monocytes35.45
CD19+_BCells(neg._sel.)17.75
CD33+_Myeloid31.9
CD34+55.65
CD4+_Tcells22.35
CD56+_NKCells38.4
CD71+_EarlyErythroid13.4
CD8+_Tcells14.7
CardiacMyocytes20.6
Caudatenucleus13.55
Cerebellum9.7
CerebellumPeduncles11.4
CiliaryGanglion6.05
CingulateCortex12.7
Colorectaladenocarcinoma7.25
DorsalRootGanglion8.15
FetalThyroid30.45
Fetalbrain12.85
Fetalliver6.95
Fetallung12.3
GlobusPallidus9.05
Heart8.55
Hypothalamus25.85
Kidney9.05
Leukemia_chronicMyelogenousK-5629.35
Leukemia_promyelocytic-HL-608.3
Leukemialymphoblastic(MOLT-4)7.5
Liver9.9
Lung19.6
Lymphnode21.1
Lymphoma_burkitts(Daudi)12
Lymphoma_burkitts(Raji)11.15
MedullaOblongata14.4
OccipitalLobe21.35
OlfactoryBulb10.2
Ovary7.8
Pancreas7.85
PancreaticIslet11.75
ParietalLobe22.15
Pituitary24.3
Placenta26.4
Pons13.55
PrefrontalCortex27.15
Prostate12.95
Salivarygland7.4
SkeletalMuscle7.45
Skin8.4
SmoothMuscle20.6
Spinalcord36.7
SubthalamicNucleus9.65
SuperiorCervicalGanglion8.95
TemporalLobe9.95
Testis25.7
TestisGermCell25.6
TestisIntersitial21
TestisLeydigCell12.55
TestisSeminiferousTubule11.4
Thalamus46.1
Thymus14.85
Thyroid18.8
Tongue9.7
Tonsil8.85
Trachea11.35
TrigeminalGanglion8
Uterus10
UterusCorpus8.5
WholeBlood18.65
Wholebrain17.4
colon11.05
pineal_day25.3
pineal_night20.04
retina36.75
small_intestine12.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P178537
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.77 ± 0.32
Basal Forebrain4.93 ± 0.26
Basal Part of Pons4.81 ± 0.52
Cerebellar Cortex5.34 ± 0.32
Cerebellar Nuclei4.6 ± 0.71
Claustrum4.26 ± 0.67
Epithalamus4.52 ± 0.55
Frontal Lobe4.72 ± 0.47
Globus Pallidus4.72 ± 0.64
Hypothalamus4.62 ± 0.53
Insula4.86 ± 0.3
Limbic Lobe4.91 ± 0.67
Mesencephalon4.85 ± 0.45
Myelencephalon4.83 ± 0.47
Occipital Lobe5.42 ± 0.64
Parietal Lobe4.84 ± 0.46
Pontine Tegmentum4.94 ± 0.59
Striatum5.3 ± 0.56
Subthalamus4.75 ± 0.65
Temporal Lobe4.79 ± 0.41
Thalamus4.92 ± 0.4
White Matter5.6 ± 0.26
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
9030624J02RikCBCerebellum7.95
8.28
9030624J02RikCTXCerebral cortex0.88
0.7
9030624J02RikHIPHippocampal region4.17
3.57
9030624J02RikHPFHippocampal formation2.83
2.34
9030624J02RikHYHypothalamus1.69
1.33
9030624J02RikLSXLateral septal complex0.59
0.28
9030624J02RikMBMidbrain2.51
2.61
9030624J02RikMYMedulla9.74
10.21
9030624J02RikOLFOlfactory bulb7.52
5.88
9030624J02RikPPons4.19
4.07
9030624J02RikPALPallidum1
0.85
9030624J02RikRHPRetrohippocampal region1.33
1.06
9030624J02RiksAMYStriatum-like amygdalar nuclei0.16
0.66
9030624J02RikSTRStriatum0.54
0.49
9030624J02RikSTRdStriatum dorsal region0.21
0.22
9030624J02RikSTRvStriatum ventral region1.61
1.11
9030624J02RikTHThalamus1.18
1.14
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00025769 20 596 615 HQQEPTKDPVILNALLHVCK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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