AutismKB 2.0

Annotation Detail for SLC17A7


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Basic Information Top
Gene Symbol:SLC17A7 ( BNPI,VGLUT1 )
Gene Full Name: solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
Band: 19q13.33
Quick LinksEntrez ID:57030; OMIM: 605208; Uniprot ID:VGLU1_HUMAN; ENSEMBL ID: ENSG00000104888; HGNC ID: 16704
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus4 / 5640127
neonate0 / 310970 
infant2 / 2362084
juvenile0 / 555560 
adult94 / 193912148
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal154 / 336030745
ovarian tumor2 / 7668226
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain110 / 110098999
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye33 / 211054156
heart0 / 896260 
intestine0 / 2344720 
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary3 / 10205129
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204229_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.8
Adipocyte5.75
AdrenalCortex6
Adrenalgland4.85
Amygdala686.3
Appendix5.85
AtrioventricularNode4.4
BDCA4+_DentriticCells6
Bonemarrow5.7
BronchialEpithelialCells5.7
CD105+_Endothelial5.85
CD14+_Monocytes6.15
CD19+_BCells(neg._sel.)6.2
CD33+_Myeloid7.45
CD34+7.35
CD4+_Tcells6.3
CD56+_NKCells6.95
CD71+_EarlyErythroid5.2
CD8+_Tcells5.4
CardiacMyocytes7.25
Caudatenucleus5.25
Cerebellum334.2
CerebellumPeduncles375.7
CiliaryGanglion4.5
CingulateCortex341.9
Colorectaladenocarcinoma5.8
DorsalRootGanglion6.85
FetalThyroid7.1
Fetalbrain156.1
Fetalliver5
Fetallung4.85
GlobusPallidus191.1
Heart7.35
Hypothalamus6.45
Kidney4.65
Leukemia_chronicMyelogenousK-5625.25
Leukemia_promyelocytic-HL-605.1
Leukemialymphoblastic(MOLT-4)4.65
Liver7.6
Lung6.4
Lymphnode5
Lymphoma_burkitts(Daudi)7.4
Lymphoma_burkitts(Raji)8.05
MedullaOblongata244.3
OccipitalLobe390.3
OlfactoryBulb4.65
Ovary5.05
Pancreas4.7
PancreaticIslet6.15
ParietalLobe344.3
Pituitary6.75
Placenta5.95
Pons83.4
PrefrontalCortex810.2
Prostate6.8
Salivarygland4.6
SkeletalMuscle6.6
Skin6.1
SmoothMuscle6.3
Spinalcord6.2
SubthalamicNucleus267.15
SuperiorCervicalGanglion10.8
TemporalLobe425.75
Testis5.65
TestisGermCell4.95
TestisIntersitial4.85
TestisLeydigCell5.65
TestisSeminiferousTubule5.35
Thalamus5.9
Thymus4.6
Thyroid7.4
Tongue5.7
Tonsil5.65
Trachea4.85
TrigeminalGanglion6.4
Uterus4.7
UterusCorpus5.2
WholeBlood6.4
Wholebrain500.65
colon5.85
pineal_day2580.22
pineal_night2341.02
retina130.9
small_intestine5.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_469_PI417557136
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.67 ± 0.84
Basal Forebrain4.85 ± 0.74
Basal Part of Pons7.25 ± 0.36
Cerebellar Cortex6.67 ± 0.37
Cerebellar Nuclei4.98 ± 0.75
Claustrum6.79 ± 0.63
Epithalamus4.75 ± 0.67
Frontal Lobe6.08 ± 0.61
Globus Pallidus3.72 ± 0.68
Hypothalamus4.77 ± 0.48
Insula6.12 ± 0.43
Limbic Lobe6.91 ± 0.79
Mesencephalon5.39 ± 0.69
Myelencephalon5.84 ± 1.07
Occipital Lobe5.94 ± 0.76
Parietal Lobe5.87 ± 0.6
Pontine Tegmentum5.4 ± 0.98
Striatum3.37 ± 1.48
Subthalamus5.41 ± 0.46
Temporal Lobe6.37 ± 0.45
Thalamus5.02 ± 0.84
White Matter3.87 ± 0.86
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slc17a7CBCerebellum100
100
Slc17a7CTXCerebral cortex100
100
Slc17a7HIPHippocampal region100
100
Slc17a7HPFHippocampal formation100
100
Slc17a7HYHypothalamus9.12
5.28
Slc17a7LSXLateral septal complex22.3
17.85
Slc17a7MBMidbrain12.78
11.37
Slc17a7MYMedulla32.29
54.92
Slc17a7OLFOlfactory bulb100
100
Slc17a7PPons29.02
52.79
Slc17a7PALPallidum11.76
6.44
Slc17a7RHPRetrohippocampal region100
100
Slc17a7sAMYStriatum-like amygdalar nuclei18.67
20.94
Slc17a7STRStriatum15.99
15.88
Slc17a7STRdStriatum dorsal region11.33
11.67
Slc17a7STRvStriatum ventral region24.89
20.11
Slc17a7THThalamus83.62
98.93
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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