Annotation Detail for RARS2
Basic Information Top
| Gene Symbol: | RARS2 ( ArgRS,DALRD2,MGC14993,MGC23778,PCH6,PRO1992,RARSL,dJ382I10.6 ) |
|---|---|
| Gene Full Name: | arginyl-tRNA synthetase 2, mitochondrial |
| Band: | 6q15 |
| Quick Links | Entrez ID:57038; OMIM: 611524; Uniprot ID:SYRM_HUMAN; ENSEMBL ID: ENSG00000146282; HGNC ID: 21406 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.485910
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 43 / 564012 | 76 | |
| neonate | 4 / 31097 | 128 | |
| infant | 7 / 23620 | 296 |  |
| juvenile | 8 / 55556 | 143 | |
| adult | 95 / 1939121 | 48 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 26 / 263845 | 98 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 10 / 95842 | 104 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 11 / 103127 | 106 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 11 / 97250 | 113 | |
| normal | 213 / 3360307 | 63 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 14 / 125680 | 111 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 6 / 46356 | 129 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 11 / 125191 | 87 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 5 / 29757 | 168 | |
| blood | 8 / 123478 | 64 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 7 / 48801 | 143 | |
| brain | 50 / 1100989 | 45 | |
| cervix | 8 / 48171 | 166 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 17 / 215722 | 78 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 12 / 211054 | 56 | |
| heart | 11 / 89626 | 122 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 16 / 207743 | 77 | |
| lung | 19 / 336974 | 56 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 5 / 41328 | 120 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 27 / 280825 | 96 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 4 / 20155 | 198 | |
| skin | 17 / 210574 | 80 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 8 / 96619 | 82 | |
| testis | 41 / 330442 | 124 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 6 / 52413 | 114 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 21 / 232878 | 90 | |
| vascular | 8 / 51780 | 154 | |
Microarray in - Probe name: CUST_7818_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.95 ± 0.43 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.31 ± 0.1 | |
| Basal Part of Pons | 7.48 ± 0.18 | |
| Cerebellar Cortex | 7.62 ± 0.19 | |
| Cerebellar Nuclei | 7.58 ± 0.18 | |
| Claustrum | 6.78 ± 0.42 | |
| Epithalamus | 7.26 ± 0.3 | |
| Frontal Lobe | 7.4 ± 0.28 | |
| Globus Pallidus | 7.4 ± 0.24 | |
| Hypothalamus | 7.45 ± 0.26 | |
| Insula | 7.35 ± 0.28 | |
| Limbic Lobe | 7.21 ± 0.31 | |
| Mesencephalon | 7.27 ± 0.35 | |
| Myelencephalon | 7.25 ± 0.32 | |
| Occipital Lobe | 7.09 ± 0.37 | |
| Parietal Lobe | 7.22 ± 0.32 | |
| Pontine Tegmentum | 7.32 ± 0.36 | |
| Striatum | 7.22 ± 0.28 | |
| Subthalamus | 7.33 ± 0.08 | |
| Temporal Lobe | 7.31 ± 0.28 | |
| Thalamus | 7.38 ± 0.2 | |
| White Matter | 8.02 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rarsl | CB | Cerebellum | 12.2 | |
| 14.24 | | |||
| Rarsl | CTX | Cerebral cortex | 31.02 | |
| 21.49 | | |||
| Rarsl | HIP | Hippocampal region | 28.33 | |
| 29.46 | | |||
| Rarsl | HPF | Hippocampal formation | 30.15 | |
| 27.93 | | |||
| Rarsl | HY | Hypothalamus | 12.3 | |
| 8.39 | | |||
| Rarsl | LSX | Lateral septal complex | 8.05 | |
| 5.36 | | |||
| Rarsl | MB | Midbrain | 8.84 | |
| 7.86 | | |||
| Rarsl | MY | Medulla | 8.81 | |
| 10.29 | | |||
| Rarsl | OLF | Olfactory bulb | 31.02 | |
| 24.25 | | |||
| Rarsl | P | Pons | 12.57 | |
| 13.24 | | |||
| Rarsl | PAL | Pallidum | 13.95 | |
| 11.54 | | |||
| Rarsl | RHP | Retrohippocampal region | 35.1 | |
| 27.23 | | |||
| Rarsl | sAMY | Striatum-like amygdalar nuclei | 12.28 | |
| 9.23 | | |||
| Rarsl | STR | Striatum | 13.81 | |
| 9.56 | | |||
| Rarsl | STRd | Striatum dorsal region | 13.67 | |
| 9.22 | | |||
| Rarsl | STRv | Striatum ventral region | 18.45 | |
| 12.78 | | |||
| Rarsl | TH | Thalamus | 14.29 | |
| 10.95 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00503370 | 21 | 16 | 36 | VLNLPPENLITSISAVPISQK | Peptide Atlas |