AutismKB 2.0

Annotation Detail for PDSS2


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Basic Information Top
Gene Symbol:PDSS2 ( C6orf210,DLP1,bA59I9.3,hDLP1 )
Gene Full Name: prenyl (decaprenyl) diphosphate synthase, subunit 2
Band: 6q21
Quick LinksEntrez ID:57107; OMIM: 610564; Uniprot ID:DLP1_HUMAN; ENSEMBL ID: ENSG00000164494; HGNC ID: 23041
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult6 / 19391213
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal8 / 33603072
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine0 / 2344720 
kidney2 / 2117779
larynx0 / 241450 
liver1 / 2077434
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach2 / 9661920
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus1 / 2328784
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219307_at
Cell line Expression level Expression bar
721_B_lymphoblasts21.45
Adipocyte6.65
AdrenalCortex6.25
Adrenalgland4.75
Amygdala5.65
Appendix5.55
AtrioventricularNode4.3
BDCA4+_DentriticCells19.65
Bonemarrow5.45
BronchialEpithelialCells5.4
CD105+_Endothelial8.4
CD14+_Monocytes8.45
CD19+_BCells(neg._sel.)10.05
CD33+_Myeloid7.25
CD34+8.1
CD4+_Tcells6.05
CD56+_NKCells17.85
CD71+_EarlyErythroid5.2
CD8+_Tcells5.6
CardiacMyocytes7.3
Caudatenucleus4.9
Cerebellum4.4
CerebellumPeduncles6.25
CiliaryGanglion3.85
CingulateCortex5.65
Colorectaladenocarcinoma5.5
DorsalRootGanglion4.25
FetalThyroid5.4
Fetalbrain5.5
Fetalliver4.8
Fetallung4.55
GlobusPallidus4.05
Heart7.2
Hypothalamus6
Kidney4.65
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.85
Leukemialymphoblastic(MOLT-4)4.4
Liver7.3
Lung5.95
Lymphnode4.65
Lymphoma_burkitts(Daudi)7.1
Lymphoma_burkitts(Raji)7.9
MedullaOblongata4.9
OccipitalLobe4.85
OlfactoryBulb4.35
Ovary3.65
Pancreas4.4
PancreaticIslet5.8
ParietalLobe5.85
Pituitary6.45
Placenta5.5
Pons5.25
PrefrontalCortex6.8
Prostate6.6
Salivarygland4.45
SkeletalMuscle6.55
Skin4.25
SmoothMuscle6.3
Spinalcord5.85
SubthalamicNucleus5.1
SuperiorCervicalGanglion6.3
TemporalLobe5.05
Testis4.7
TestisGermCell4.5
TestisIntersitial4.65
TestisLeydigCell5.45
TestisSeminiferousTubule4.65
Thalamus5.65
Thymus4.35
Thyroid7.75
Tongue5.45
Tonsil5.35
Trachea4.6
TrigeminalGanglion5.55
Uterus4.55
UterusCorpus5.1
WholeBlood6.05
Wholebrain4.7
colon7.6
pineal_day6.9
pineal_night6.76
retina6.65
small_intestine5.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_16065_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.2 ± 0.59
Basal Forebrain4.12 ± 0.62
Basal Part of Pons4.3 ± 0.55
Cerebellar Cortex4.36 ± 0.44
Cerebellar Nuclei4.52 ± 0.47
Claustrum4.32 ± 0.66
Epithalamus4.24 ± 0.41
Frontal Lobe4.13 ± 0.61
Globus Pallidus4.53 ± 0.58
Hypothalamus3.98 ± 0.47
Insula4.17 ± 0.42
Limbic Lobe4.25 ± 0.57
Mesencephalon4.25 ± 0.53
Myelencephalon4.09 ± 0.54
Occipital Lobe4.09 ± 0.42
Parietal Lobe4.14 ± 0.47
Pontine Tegmentum4.12 ± 0.6
Striatum3.88 ± 0.51
Subthalamus3.57 ± 0.76
Temporal Lobe4.1 ± 0.51
Thalamus4.25 ± 0.46
White Matter4.46 ± 0.66
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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