AutismKB 2.0

Annotation Detail for C20orf3


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:C20orf3 ( APMAP,BSCv )
Gene Full Name: chromosome 20 open reading frame 3
Band: 20p11.2
Quick LinksEntrez ID:57136; OMIM: NA; Uniprot ID:APMAP_HUMAN; ENSEMBL ID: ENSG00000101474; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst7 / 62319112
fetus61 / 564012108
neonate0 / 310970 
infant3 / 23620127
juvenile1 / 5555617
adult297 / 1939121153
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor4 / 12794312
bladder carcinoma4 / 17475228
breast (mammary gland) tumor2 / 9417821
cervical tumor5 / 34366145
chondrosarcoma21 / 82823253
colorectal tumor18 / 114246157
esophageal tumor1 / 1729057
gastrointestinal tumor28 / 119369234
germ cell tumor19 / 26384572
glioma14 / 106883130
head and neck tumor54 / 136302396
kidney tumor9 / 68959130
leukemia35 / 95842365
liver tumor7 / 9635972
lung tumor23 / 103127223
lymphoma2 / 7175527
non-neoplasia4 / 9725041
normal357 / 3360307106
ovarian tumor17 / 76682221
pancreatic tumor43 / 104616411
primitive neuroectodermal tumor of the CNS19 / 125680151
prostate cancer23 / 102680223
retinoblastoma11 / 46356237
skin tumor31 / 124949248
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor12 / 90257132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue5 / 13106381
adrenal gland4 / 33197120
ascites14 / 40015349
bladder6 / 29757201
blood42 / 123478340
bone15 / 71655209
bone marrow10 / 48801204
brain124 / 1100989112
cervix5 / 48171103
connective tissue13 / 14925587
ear2 / 16212123
embryonic tissue20 / 21572292
esophagus1 / 2020949
eye29 / 211054137
heart5 / 8962655
intestine32 / 234472136
kidney21 / 21177799
larynx1 / 2414541
liver19 / 20774391
lung58 / 336974172
lymph0 / 442700 
lymph node4 / 9161043
mammary gland12 / 15327178
mouth1 / 6705214
muscle8 / 10771574
nerve5 / 15768317
ovary21 / 102051205
pancreas52 / 214812242
parathyroid5 / 20539243
pharynx2 / 4132848
pituitary gland3 / 16585180
placenta34 / 280825121
prostate25 / 189345132
salivary gland0 / 201550 
skin50 / 210574237
spleen7 / 53952129
stomach17 / 96619175
testis53 / 330442160
thymus5 / 8113161
thyroid54 / 474731137
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus16 / 23287868
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206656_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts206.35
Adipocyte569.3
AdrenalCortex25.5
Adrenalgland139.1
Amygdala539.5
Appendix21.45
AtrioventricularNode9.7
BDCA4+_DentriticCells422.95
Bonemarrow744.7
BronchialEpithelialCells445.9
CD105+_Endothelial250.5
CD14+_Monocytes355.1
CD19+_BCells(neg._sel.)172.75
CD33+_Myeloid462.4
CD34+479.8
CD4+_Tcells373.4
CD56+_NKCells3049.15
CD71+_EarlyErythroid174
CD8+_Tcells564.45
CardiacMyocytes296.3
Caudatenucleus193.8
Cerebellum640.55
CerebellumPeduncles917.35
CiliaryGanglion58.95
CingulateCortex270.15
Colorectaladenocarcinoma593.65
DorsalRootGanglion40.5
FetalThyroid665.55
Fetalbrain180.8
Fetalliver256.45
Fetallung298.5
GlobusPallidus166.7
Heart63.65
Hypothalamus571.75
Kidney74.6
Leukemia_chronicMyelogenousK-56275.2
Leukemia_promyelocytic-HL-6062.65
Leukemialymphoblastic(MOLT-4)288.85
Liver664.95
Lung420.65
Lymphnode161.95
Lymphoma_burkitts(Daudi)94.6
Lymphoma_burkitts(Raji)262.1
MedullaOblongata235.85
OccipitalLobe258.2
OlfactoryBulb164.1
Ovary30.75
Pancreas140.2
PancreaticIslet325.3
ParietalLobe217.2
Pituitary414.8
Placenta847.1
Pons135.15
PrefrontalCortex470.5
Prostate275.25
Salivarygland99.8
SkeletalMuscle16
Skin25.4
SmoothMuscle416.15
Spinalcord268.75
SubthalamicNucleus208.6
SuperiorCervicalGanglion30.05
TemporalLobe200.9
Testis334.6
TestisGermCell379.15
TestisIntersitial147.35
TestisLeydigCell167.25
TestisSeminiferousTubule150.1
Thalamus263.75
Thymus206.1
Thyroid1863.35
Tongue20.5
Tonsil69.2
Trachea115.6
TrigeminalGanglion17.75
Uterus115
UterusCorpus62.8
WholeBlood1436.85
Wholebrain644.7
colon151.95
pineal_day2234.6
pineal_night1812.82
retina359.375
small_intestine107.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P297078
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.84 ± 0.72
Basal Forebrain4.59 ± 0.43
Basal Part of Pons5.21 ± 0.53
Cerebellar Cortex5.48 ± 0.43
Cerebellar Nuclei5.13 ± 0.44
Claustrum4.23 ± 0.82
Epithalamus5.06 ± 0.56
Frontal Lobe5.12 ± 0.6
Globus Pallidus4.32 ± 0.62
Hypothalamus5.36 ± 0.77
Insula5.18 ± 0.58
Limbic Lobe4.82 ± 0.78
Mesencephalon4.93 ± 0.67
Myelencephalon4.83 ± 0.77
Occipital Lobe4.41 ± 0.82
Parietal Lobe4.92 ± 0.68
Pontine Tegmentum4.98 ± 0.76
Striatum3.97 ± 0.64
Subthalamus5.13 ± 0.44
Temporal Lobe5.18 ± 0.6
Thalamus4.72 ± 0.69
White Matter4.36 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
2310001A20RikCBCerebellum23.85
47.32
2310001A20RikCTXCerebral cortex55.35
45.87
2310001A20RikHIPHippocampal region33.3
50.06
2310001A20RikHPFHippocampal formation38.33
46.57
2310001A20RikHYHypothalamus50.82
44.96
2310001A20RikLSXLateral septal complex39.72
32.31
2310001A20RikMBMidbrain42.63
43.58
2310001A20RikMYMedulla42.05
57.78
2310001A20RikOLFOlfactory bulb40.03
34.42
2310001A20RikPPons42.65
53.74
2310001A20RikPALPallidum40.63
42.57
2310001A20RikRHPRetrohippocampal region48.6
43.86
2310001A20RiksAMYStriatum-like amygdalar nuclei38.11
31.71
2310001A20RikSTRStriatum18.6
15.19
2310001A20RikSTRdStriatum dorsal region12.38
10.42
2310001A20RikSTRvStriatum ventral region22.2
16.38
2310001A20RikTHThalamus34.97
33.49
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
APMAP_HUMAN_10 19 10 28 RPLRPQVVTDDDGQAPEAK PRIDE
APMAP_HUMAN_183 12 183 194 LLLSSETPIEGK PRIDE
APMAP_HUMAN_224 15 224 238 RDYLLLVMEGTDDGR PRIDE
APMAP_HUMAN_238 9 238 246 LLEYDTVTR PRIDE
APMAP_HUMAN_257 23 257 279 FPNGVQLSPAEDFVLVAETTMAR PRIDE
APMAP_HUMAN_347 9 347 355 LFSQETVMK PRIDE
APMAP_HUMAN_375 29 375 403 SLHDPDGLVATYISEVHEHDGHLYLGSFR PRIDE
APMAP_HUMAN_93 27 93 119 LFENQLVGPESIAHIGDVMFTGTADGR PRIDE
APMAP_HUMAN_94 27 94 120 LFENQLVGPESIAHIGDVMFTGTADGR PRIDE
PAp00004859 27 94 120 LFENQLVGPESIAHIGDVMFTGTADGR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved