Annotation Detail for PSMD8


Gene Symbol: | PSMD8 ( HIP6,HYPF,MGC1660,Nin1p,Rpn12,S14,p31 ) |
---|---|
Gene Full Name: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 |
Band: | 19q13.2 |
Quick Links | Entrez ID:5714; OMIM: NA; Uniprot ID:PSMD8_HUMAN; ENSEMBL ID: ENSG00000099341; HGNC ID: 9566 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.78466
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 7 / 70761 | 98 | ![]() |
blastocyst | 9 / 62319 | 144 | ![]() |
fetus | 52 / 564012 | 92 | ![]() |
neonate | 4 / 31097 | 128 | ![]() |
infant | 0 / 23620 | 0 | |
juvenile | 5 / 55556 | 89 | ![]() |
adult | 403 / 1939121 | 207 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 4 / 12794 | 312 | ![]() |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 16 / 94178 | 169 | ![]() |
cervical tumor | 2 / 34366 | 58 | ![]() |
chondrosarcoma | 16 / 82823 | 193 | ![]() |
colorectal tumor | 55 / 114246 | 481 | ![]() |
esophageal tumor | 2 / 17290 | 115 | ![]() |
gastrointestinal tumor | 28 / 119369 | 234 | ![]() |
germ cell tumor | 16 / 263845 | 60 | ![]() |
glioma | 9 / 106883 | 84 | ![]() |
head and neck tumor | 26 / 136302 | 190 | ![]() |
kidney tumor | 7 / 68959 | 101 | ![]() |
leukemia | 103 / 95842 | 1074 | ![]() |
liver tumor | 16 / 96359 | 166 | ![]() |
lung tumor | 21 / 103127 | 203 | ![]() |
lymphoma | 10 / 71755 | 139 | ![]() |
non-neoplasia | 5 / 97250 | 51 | ![]() |
normal | 373 / 3360307 | 111 | ![]() |
ovarian tumor | 29 / 76682 | 378 | ![]() |
pancreatic tumor | 28 / 104616 | 267 | ![]() |
primitive neuroectodermal tumor of the CNS | 23 / 125680 | 183 | ![]() |
prostate cancer | 15 / 102680 | 146 | ![]() |
retinoblastoma | 7 / 46356 | 151 | ![]() |
skin tumor | 33 / 124949 | 264 | ![]() |
soft tissue/muscle tissue tumor | 15 / 125191 | 119 | ![]() |
uterine tumor | 39 / 90257 | 432 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 1 / 13106 | 76 | ![]() |
adrenal gland | 4 / 33197 | 120 | ![]() |
ascites | 9 / 40015 | 224 | ![]() |
bladder | 0 / 29757 | 0 | |
blood | 106 / 123478 | 858 | ![]() |
bone | 14 / 71655 | 195 | ![]() |
bone marrow | 2 / 48801 | 40 | ![]() |
brain | 71 / 1100989 | 64 | ![]() |
cervix | 2 / 48171 | 41 | ![]() |
connective tissue | 10 / 149255 | 66 | ![]() |
ear | 0 / 16212 | 0 | |
embryonic tissue | 20 / 215722 | 92 | ![]() |
esophagus | 2 / 20209 | 98 | ![]() |
eye | 26 / 211054 | 123 | ![]() |
heart | 12 / 89626 | 133 | ![]() |
intestine | 72 / 234472 | 307 | ![]() |
kidney | 22 / 211777 | 103 | ![]() |
larynx | 1 / 24145 | 41 | ![]() |
liver | 31 / 207743 | 149 | ![]() |
lung | 72 / 336974 | 213 | ![]() |
lymph | 4 / 44270 | 90 | ![]() |
lymph node | 22 / 91610 | 240 | ![]() |
mammary gland | 27 / 153271 | 176 | ![]() |
mouth | 16 / 67052 | 238 | ![]() |
muscle | 17 / 107715 | 157 | ![]() |
nerve | 0 / 15768 | 0 | |
ovary | 29 / 102051 | 284 | ![]() |
pancreas | 42 / 214812 | 195 | ![]() |
parathyroid | 11 / 20539 | 535 | ![]() |
pharynx | 2 / 41328 | 48 | ![]() |
pituitary gland | 3 / 16585 | 180 | ![]() |
placenta | 25 / 280825 | 89 | ![]() |
prostate | 29 / 189345 | 153 | ![]() |
salivary gland | 3 / 20155 | 148 | ![]() |
skin | 55 / 210574 | 261 | ![]() |
spleen | 3 / 53952 | 55 | ![]() |
stomach | 11 / 96619 | 113 | ![]() |
testis | 39 / 330442 | 118 | ![]() |
thymus | 5 / 81131 | 61 | ![]() |
thyroid | 10 / 47473 | 210 | ![]() |
tonsil | 3 / 16999 | 176 | ![]() |
trachea | 1 / 52413 | 19 | ![]() |
umbilical cord | 4 / 13680 | 292 | ![]() |
uterus | 59 / 232878 | 253 | ![]() |
vascular | 5 / 51780 | 96 | ![]() |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 200820_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 1284.45 | ![]() |
Adipocyte | 468.1 | ![]() |
AdrenalCortex | 115.65 | ![]() |
Adrenalgland | 124.9 | ![]() |
Amygdala | 296.85 | ![]() |
Appendix | 36.65 | ![]() |
AtrioventricularNode | 21.15 | ![]() |
BDCA4+_DentriticCells | 560.7 | ![]() |
Bonemarrow | 126.5 | ![]() |
BronchialEpithelialCells | 864.55 | ![]() |
CD105+_Endothelial | 609.6 | ![]() |
CD14+_Monocytes | 698.6 | ![]() |
CD19+_BCells(neg._sel.) | 387.45 | ![]() |
CD33+_Myeloid | 491.35 | ![]() |
CD34+ | 643.3 | ![]() |
CD4+_Tcells | 296.75 | ![]() |
CD56+_NKCells | 549.4 | ![]() |
CD71+_EarlyErythroid | 744.9 | ![]() |
CD8+_Tcells | 274.9 | ![]() |
CardiacMyocytes | 505.95 | ![]() |
Caudatenucleus | 112.3 | ![]() |
Cerebellum | 168.5 | ![]() |
CerebellumPeduncles | 228.8 | ![]() |
CiliaryGanglion | 31.7 | ![]() |
CingulateCortex | 155.95 | ![]() |
Colorectaladenocarcinoma | 794.55 | ![]() |
DorsalRootGanglion | 47.3 | ![]() |
FetalThyroid | 172.65 | ![]() |
Fetalbrain | 167.85 | ![]() |
Fetalliver | 113.55 | ![]() |
Fetallung | 251.1 | ![]() |
GlobusPallidus | 83.5 | ![]() |
Heart | 879.9 | ![]() |
Hypothalamus | 267.85 | ![]() |
Kidney | 109.85 | ![]() |
Leukemia_chronicMyelogenousK-562 | 384.25 | ![]() |
Leukemia_promyelocytic-HL-60 | 198.95 | ![]() |
Leukemialymphoblastic(MOLT-4) | 307.05 | ![]() |
Liver | 343.9 | ![]() |
Lung | 667.65 | ![]() |
Lymphnode | 87.95 | ![]() |
Lymphoma_burkitts(Daudi) | 397 | ![]() |
Lymphoma_burkitts(Raji) | 369.95 | ![]() |
MedullaOblongata | 109.55 | ![]() |
OccipitalLobe | 209 | ![]() |
OlfactoryBulb | 72.5 | ![]() |
Ovary | 54.65 | ![]() |
Pancreas | 129.95 | ![]() |
PancreaticIslet | 217.05 | ![]() |
ParietalLobe | 194.15 | ![]() |
Pituitary | 152.9 | ![]() |
Placenta | 640.25 | ![]() |
Pons | 111.25 | ![]() |
PrefrontalCortex | 176.35 | ![]() |
Prostate | 732.45 | ![]() |
Salivarygland | 87.7 | ![]() |
SkeletalMuscle | 154.45 | ![]() |
Skin | 49.45 | ![]() |
SmoothMuscle | 744 | ![]() |
Spinalcord | 175.3 | ![]() |
SubthalamicNucleus | 103.75 | ![]() |
SuperiorCervicalGanglion | 15.75 | ![]() |
TemporalLobe | 168.45 | ![]() |
Testis | 376.7 | ![]() |
TestisGermCell | 501.25 | ![]() |
TestisIntersitial | 499.45 | ![]() |
TestisLeydigCell | 345.1 | ![]() |
TestisSeminiferousTubule | 304.9 | ![]() |
Thalamus | 275.3 | ![]() |
Thymus | 318.7 | ![]() |
Thyroid | 362.65 | ![]() |
Tongue | 96.85 | ![]() |
Tonsil | 145.35 | ![]() |
Trachea | 98.75 | ![]() |
TrigeminalGanglion | 33.4 | ![]() |
Uterus | 218.65 | ![]() |
UterusCorpus | 110.15 | ![]() |
WholeBlood | 176.5 | ![]() |
Wholebrain | 526.65 | ![]() |
colon | 243 | ![]() |
pineal_day | 426.42 | ![]() |
pineal_night | 356.72 | ![]() |
retina | 343.775 | ![]() |
small_intestine | 310.1 | ![]() |
- Probe name: CUST_13020_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 9.4 ± 0.27 | ![]() ![]() ![]() |
Basal Forebrain | 9.18 ± 0.23 | ![]() ![]() ![]() |
Basal Part of Pons | 9.55 ± 0.21 | ![]() ![]() ![]() |
Cerebellar Cortex | 9.43 ± 0.27 | ![]() ![]() ![]() |
Cerebellar Nuclei | 9.33 ± 0.3 | ![]() ![]() ![]() |
Claustrum | 9.14 ± 0.21 | ![]() ![]() ![]() |
Epithalamus | 9.15 ± 0.29 | ![]() ![]() ![]() |
Frontal Lobe | 9.55 ± 0.28 | ![]() ![]() ![]() |
Globus Pallidus | 8.81 ± 0.23 | ![]() ![]() ![]() |
Hypothalamus | 9.64 ± 0.31 | ![]() ![]() ![]() |
Insula | 9.55 ± 0.2 | ![]() ![]() ![]() |
Limbic Lobe | 9.38 ± 0.44 | ![]() ![]() ![]() |
Mesencephalon | 9.28 ± 0.29 | ![]() ![]() ![]() |
Myelencephalon | 9.36 ± 0.37 | ![]() ![]() ![]() |
Occipital Lobe | 9 ± 0.35 | ![]() ![]() ![]() |
Parietal Lobe | 9.36 ± 0.29 | ![]() ![]() ![]() |
Pontine Tegmentum | 9.4 ± 0.39 | ![]() ![]() ![]() |
Striatum | 8.99 ± 0.28 | ![]() ![]() ![]() |
Subthalamus | 9.29 ± 0.3 | ![]() ![]() ![]() |
Temporal Lobe | 9.55 ± 0.33 | ![]() ![]() ![]() |
Thalamus | 9.38 ± 0.27 | ![]() ![]() ![]() |
White Matter | 9.11 ± 0.22 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Psmd8 | CB | Cerebellum | 30.84 | ![]() |
100 | ![]() | |||
Psmd8 | CTX | Cerebral cortex | 100 | ![]() |
100 | ![]() | |||
Psmd8 | HIP | Hippocampal region | 100 | ![]() |
100 | ![]() | |||
Psmd8 | HPF | Hippocampal formation | 100 | ![]() |
100 | ![]() | |||
Psmd8 | HY | Hypothalamus | 47.57 | ![]() |
51.86 | ![]() | |||
Psmd8 | LSX | Lateral septal complex | 90.52 | ![]() |
94.64 | ![]() | |||
Psmd8 | MB | Midbrain | 33.03 | ![]() |
38.27 | ![]() | |||
Psmd8 | MY | Medulla | 63.63 | ![]() |
100 | ![]() | |||
Psmd8 | OLF | Olfactory bulb | 100 | ![]() |
100 | ![]() | |||
Psmd8 | P | Pons | 33.39 | ![]() |
49.28 | ![]() | |||
Psmd8 | PAL | Pallidum | 56.79 | ![]() |
70.9 | ![]() | |||
Psmd8 | RHP | Retrohippocampal region | 65.31 | ![]() |
67.49 | ![]() | |||
Psmd8 | sAMY | Striatum-like amygdalar nuclei | 100 | ![]() |
100 | ![]() | |||
Psmd8 | STR | Striatum | 100 | ![]() |
98.4 | ![]() | |||
Psmd8 | STRd | Striatum dorsal region | 98.76 | ![]() |
91.63 | ![]() | |||
Psmd8 | STRv | Striatum ventral region | 100 | ![]() |
100 | ![]() | |||
Psmd8 | TH | Thalamus | 90.79 | ![]() |
100 | ![]() |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
PAp00069134 | 31 | 307 | 337 | GWVLGPNNYYSFASQQQKPEDTTIPSTELAK | Peptide Atlas |
PSMD8_HUMAN_0 | 0 | 0 | 0 | LVLLELNFLPTTGTK | PRIDE |
PSMD8_HUMAN_111 | 14 | 111 | 124 | VAEFHTELERLPAK | PRIDE |
PSMD8_HUMAN_27 | 15 | 27 | 41 | LVLLELNFLPTTGTK | PRIDE |
PSMD8_HUMAN_39 | 14 | 39 | 52 | TGTKLTKQQLILAR | PRIDE |