AutismKB 2.0

Annotation Detail for ZMIZ1


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Basic Information Top
Gene Symbol:ZMIZ1 ( FLJ13541,KIAA1224,MIZ,RAI17,TRAFIP10,ZIMP10,hZIMP10 )
Gene Full Name: zinc finger, MIZ-type containing 1
Band: 10q22.3
Quick LinksEntrez ID:57178; OMIM: 607159; Uniprot ID:ZMIZ1_HUMAN; ENSEMBL ID: ENSG00000108175; HGNC ID: 16493
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body12 / 70761169
blastocyst8 / 62319128
fetus64 / 564012113
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult146 / 193912175
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor8 / 9417884
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor2 / 11424617
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor16 / 26384560
glioma17 / 106883159
head and neck tumor6 / 13630244
kidney tumor1 / 6895914
leukemia9 / 9584293
liver tumor3 / 9635931
lung tumor3 / 10312729
lymphoma2 / 7175527
non-neoplasia6 / 9725061
normal256 / 336030776
ovarian tumor6 / 7668278
pancreatic tumor11 / 104616105
primitive neuroectodermal tumor of the CNS11 / 12568087
prostate cancer10 / 10268097
retinoblastoma6 / 46356129
skin tumor5 / 12494940
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder2 / 2975767
blood13 / 123478105
bone3 / 7165541
bone marrow1 / 4880120
brain106 / 110098996
cervix0 / 481710 
connective tissue14 / 14925593
ear2 / 16212123
embryonic tissue32 / 215722148
esophagus1 / 2020949
eye15 / 21105471
heart2 / 8962622
intestine6 / 23447225
kidney6 / 21177728
larynx1 / 2414541
liver3 / 20774314
lung9 / 33697426
lymph1 / 4427022
lymph node6 / 9161065
mammary gland19 / 153271123
mouth0 / 670520 
muscle3 / 10771527
nerve0 / 157680 
ovary6 / 10205158
pancreas13 / 21481260
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta22 / 28082578
prostate13 / 18934568
salivary gland1 / 2015549
skin9 / 21057442
spleen4 / 5395274
stomach2 / 9661920
testis10 / 33044230
thymus1 / 8113112
thyroid5 / 47473105
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus13 / 23287855
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212124_at
Cell line Expression level Expression bar
721_B_lymphoblasts574.6
Adipocyte209.2
AdrenalCortex162.85
Adrenalgland310.35
Amygdala379.45
Appendix75.25
AtrioventricularNode70.05
BDCA4+_DentriticCells455.55
Bonemarrow111.8
BronchialEpithelialCells102.55
CD105+_Endothelial182.8
CD14+_Monocytes466.85
CD19+_BCells(neg._sel.)36.8
CD33+_Myeloid934.35
CD34+992.1
CD4+_Tcells38.65
CD56+_NKCells194.2
CD71+_EarlyErythroid78.35
CD8+_Tcells46.05
CardiacMyocytes86.35
Caudatenucleus153
Cerebellum470.3
CerebellumPeduncles294.9
CiliaryGanglion133.1
CingulateCortex203.3
Colorectaladenocarcinoma44.05
DorsalRootGanglion58.25
FetalThyroid362.4
Fetalbrain996.85
Fetalliver64.45
Fetallung303.55
GlobusPallidus102.25
Heart325.85
Hypothalamus408.55
Kidney164.6
Leukemia_chronicMyelogenousK-56264.5
Leukemia_promyelocytic-HL-6037.85
Leukemialymphoblastic(MOLT-4)132.95
Liver74.25
Lung633.8
Lymphnode160.95
Lymphoma_burkitts(Daudi)90.65
Lymphoma_burkitts(Raji)137.35
MedullaOblongata155.95
OccipitalLobe242.45
OlfactoryBulb162.5
Ovary56.9
Pancreas77.45
PancreaticIslet223.05
ParietalLobe151.1
Pituitary169.9
Placenta416.95
Pons80.3
PrefrontalCortex550.35
Prostate282
Salivarygland111
SkeletalMuscle63.35
Skin87.65
SmoothMuscle93.35
Spinalcord357.85
SubthalamicNucleus143.55
SuperiorCervicalGanglion50.9
TemporalLobe124.75
Testis37.85
TestisGermCell44.55
TestisIntersitial22.25
TestisLeydigCell26.1
TestisSeminiferousTubule18.7
Thalamus124.25
Thymus197.95
Thyroid751.45
Tongue132.1
Tonsil217.15
Trachea195.25
TrigeminalGanglion39.85
Uterus520.2
UterusCorpus350.55
WholeBlood445.1
Wholebrain378.1
colon251.1
pineal_day1202.5
pineal_night1242.22
retina583.625
small_intestine270.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8615_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.95 ± 0.66
Basal Forebrain3.66 ± 0.37
Basal Part of Pons3.86 ± 0.23
Cerebellar Cortex3.31 ± 0.44
Cerebellar Nuclei3.37 ± 0.44
Claustrum4.34 ± 0.79
Epithalamus3.22 ± 0.54
Frontal Lobe3.55 ± 0.56
Globus Pallidus3.78 ± 0.49
Hypothalamus3.23 ± 0.36
Insula3.42 ± 0.47
Limbic Lobe3.77 ± 0.59
Mesencephalon3.6 ± 0.69
Myelencephalon3.69 ± 0.6
Occipital Lobe3.86 ± 0.5
Parietal Lobe3.71 ± 0.54
Pontine Tegmentum3.59 ± 0.61
Striatum4.34 ± 0.54
Subthalamus3.14 ± 0.39
Temporal Lobe3.63 ± 0.71
Thalamus3.65 ± 0.47
White Matter4.1 ± 0.53
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rai17CBCerebellum100
100
Rai17CTXCerebral cortex100
100
Rai17HIPHippocampal region79.14
98.4
Rai17HPFHippocampal formation94.79
96.06
Rai17HYHypothalamus89.23
68.23
Rai17LSXLateral septal complex100
100
Rai17MBMidbrain95.45
73.9
Rai17MYMedulla96.07
91.07
Rai17OLFOlfactory bulb100
100
Rai17PPons90.85
79.61
Rai17PALPallidum87.91
74.03
Rai17RHPRetrohippocampal region100
92.99
Rai17sAMYStriatum-like amygdalar nuclei100
85.87
Rai17STRStriatum90.76
73.94
Rai17STRdStriatum dorsal region87.41
67.04
Rai17STRvStriatum ventral region86.76
72.9
Rai17THThalamus81.72
57.18
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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