Annotation Detail for SLC39A10
Basic Information Top
| Gene Symbol: | SLC39A10 ( DKFZp781L10106,LZT-Hs2,MGC126565,MGC138428 ) |
|---|---|
| Gene Full Name: | solute carrier family 39 (zinc transporter), member 10 |
| Band: | 2q32.3 |
| Quick Links | Entrez ID:57181; OMIM: 608733; Uniprot ID:S39AA_HUMAN; ENSEMBL ID: ENSG00000196950; HGNC ID: 20861 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.650158
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 10 / 70761 | 141 |  |
| blastocyst | 11 / 62319 | 176 | |
| fetus | 20 / 564012 | 35 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 86 / 1939121 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 4 / 34366 | 116 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 16 / 263845 | 60 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 11 / 136302 | 80 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 171 / 3360307 | 50 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 18 / 102680 | 175 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 100 / 1100989 | 90 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 29 / 215722 | 134 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 4 / 336974 | 11 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 7 / 67052 | 104 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 20 / 189345 | 105 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 26 / 330442 | 78 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 16 / 232878 | 68 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P119778
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.93 ± 0.39 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.25 ± 0.29 | |
| Basal Part of Pons | 7.98 ± 0.3 | |
| Cerebellar Cortex | 7.8 ± 0.31 | |
| Cerebellar Nuclei | 8.15 ± 0.36 | |
| Claustrum | 8.79 ± 0.49 | |
| Epithalamus | 7.59 ± 0.37 | |
| Frontal Lobe | 8.47 ± 0.4 | |
| Globus Pallidus | 7.76 ± 0.73 | |
| Hypothalamus | 8.04 ± 0.3 | |
| Insula | 8.37 ± 0.33 | |
| Limbic Lobe | 8.57 ± 0.45 | |
| Mesencephalon | 8.29 ± 0.53 | |
| Myelencephalon | 8.26 ± 0.42 | |
| Occipital Lobe | 8.27 ± 0.4 | |
| Parietal Lobe | 8.4 ± 0.5 | |
| Pontine Tegmentum | 8.37 ± 0.38 | |
| Striatum | 7.91 ± 0.73 | |
| Subthalamus | 8.41 ± 0.05 | |
| Temporal Lobe | 8.42 ± 0.26 | |
| Thalamus | 8.09 ± 0.39 | |
| White Matter | 7.2 ± 0.68 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc39a10 | CB | Cerebellum | 22.76 | |
| 31.68 | | |||
| Slc39a10 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Slc39a10 | HIP | Hippocampal region | 47.69 | |
| 84.76 | | |||
| Slc39a10 | HPF | Hippocampal formation | 68.57 | |
| 97.01 | | |||
| Slc39a10 | HY | Hypothalamus | 31.25 | |
| 26.38 | | |||
| Slc39a10 | LSX | Lateral septal complex | 76.76 | |
| 75.4 | | |||
| Slc39a10 | MB | Midbrain | 38.97 | |
| 35.3 | | |||
| Slc39a10 | MY | Medulla | 19.33 | |
| 19.56 | | |||
| Slc39a10 | OLF | Olfactory bulb | 76.74 | |
| 100 | | |||
| Slc39a10 | P | Pons | 26.5 | |
| 25.67 | | |||
| Slc39a10 | PAL | Pallidum | 34.03 | |
| 31.57 | | |||
| Slc39a10 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Slc39a10 | sAMY | Striatum-like amygdalar nuclei | 62.48 | |
| 51.91 | | |||
| Slc39a10 | STR | Striatum | 69.48 | |
| 57.1 | | |||
| Slc39a10 | STRd | Striatum dorsal region | 67.93 | |
| 54.84 | | |||
| Slc39a10 | STRv | Striatum ventral region | 78.52 | |
| 64.28 | | |||
| Slc39a10 | TH | Thalamus | 36.74 | |
| 34.33 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00006216 | 32 | 563 | 594 | PLAGTDDSVVSEDRLNETELTDLEGQQESPPK | Peptide Atlas |