Annotation Detail for RALGAPA2
Basic Information Top
| Gene Symbol: | RALGAPA2 ( AS250,C20orf74,FLJ12819,KIAA1272,bA287B20.1,dJ1049G11,dJ1049G11.4 ) |
|---|---|
| Gene Full Name: | Ral GTPase activating protein, alpha subunit 2 (catalytic) |
| Band: | 20p11.23 |
| Quick Links | Entrez ID:57186; OMIM: NA; Uniprot ID:RGPA2_HUMAN; ENSEMBL ID: ENSG00000188559; HGNC ID: 16207 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.472285
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 26 / 564012 | 46 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 65 / 1939121 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 6 / 114246 | 52 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 6 / 136302 | 44 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 76 / 3360307 | 22 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 9 / 123478 | 72 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 10 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 8 / 336974 | 23 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 13 / 214812 | 60 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 10 / 280825 | 35 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 5 / 330442 | 15 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_532_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.42 ± 0.49 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.87 ± 0.28 | |
| Basal Part of Pons | 5.29 ± 0.45 | |
| Cerebellar Cortex | 6.06 ± 0.16 | |
| Cerebellar Nuclei | 5.68 ± 0.33 | |
| Claustrum | 5.38 ± 0.6 | |
| Epithalamus | 5.66 ± 0.47 | |
| Frontal Lobe | 5.56 ± 0.4 | |
| Globus Pallidus | 5.84 ± 0.43 | |
| Hypothalamus | 5.29 ± 0.52 | |
| Insula | 5.5 ± 0.36 | |
| Limbic Lobe | 5.51 ± 0.46 | |
| Mesencephalon | 5.63 ± 0.5 | |
| Myelencephalon | 5.58 ± 0.45 | |
| Occipital Lobe | 6.1 ± 0.5 | |
| Parietal Lobe | 5.65 ± 0.42 | |
| Pontine Tegmentum | 5.76 ± 0.45 | |
| Striatum | 5.69 ± 0.45 | |
| Subthalamus | 5.56 ± 0.15 | |
| Temporal Lobe | 5.53 ± 0.38 | |
| Thalamus | 6.03 ± 0.42 | |
| White Matter | 6.68 ± 0.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| A230067G21Rik | CB | Cerebellum | 26.08 | |
| 32.9 | | |||
| A230067G21Rik | CTX | Cerebral cortex | 45.11 | |
| 32.93 | | |||
| A230067G21Rik | HIP | Hippocampal region | 54.09 | |
| 77.23 | | |||
| A230067G21Rik | HPF | Hippocampal formation | 47.99 | |
| 56.3 | | |||
| A230067G21Rik | HY | Hypothalamus | 14.33 | |
| 9.16 | | |||
| A230067G21Rik | LSX | Lateral septal complex | 9.3 | |
| 5.33 | | |||
| A230067G21Rik | MB | Midbrain | 29.51 | |
| 22.61 | | |||
| A230067G21Rik | MY | Medulla | 38.24 | |
| 33.97 | | |||
| A230067G21Rik | OLF | Olfactory bulb | 54.39 | |
| 47.52 | | |||
| A230067G21Rik | P | Pons | 31.43 | |
| 28.02 | | |||
| A230067G21Rik | PAL | Pallidum | 30.85 | |
| 24.2 | | |||
| A230067G21Rik | RHP | Retrohippocampal region | 36.01 | |
| 26.08 | | |||
| A230067G21Rik | sAMY | Striatum-like amygdalar nuclei | 21.54 | |
| 14.11 | | |||
| A230067G21Rik | STR | Striatum | 25.66 | |
| 17.87 | | |||
| A230067G21Rik | STRd | Striatum dorsal region | 21.98 | |
| 16.22 | | |||
| A230067G21Rik | STRv | Striatum ventral region | 40.75 | |
| 25.09 | | |||
| A230067G21Rik | TH | Thalamus | 20.64 | |
| 17.15 | |