Annotation Detail for SEPN1
Basic Information Top
| Gene Symbol: | SEPN1 ( FLJ24021,MDRS1,RSMD1,RSS,SELN ) |
|---|---|
| Gene Full Name: | selenoprotein N, 1 |
| Band: | 1p36.13 |
| Quick Links | Entrez ID:57190; OMIM: 606210; Uniprot ID:SELN_HUMAN; ENSEMBL ID: ENSG00000162430; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.323396
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 12 / 70761 | 169 |  |
| blastocyst | 10 / 62319 | 160 | |
| fetus | 26 / 564012 | 46 |  |
| neonate | 7 / 31097 | 225 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 140 / 1939121 | 72 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 10 / 82823 | 120 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 12 / 119369 | 100 | |
| germ cell tumor | 19 / 263845 | 72 | |
| glioma | 13 / 106883 | 121 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 8 / 103127 | 77 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 173 / 3360307 | 51 | |
| ovarian tumor | 14 / 76682 | 182 | |
| pancreatic tumor | 16 / 104616 | 152 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 11 / 102680 | 107 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 31 / 124949 | 248 | |
| soft tissue/muscle tissue tumor | 11 / 125191 | 87 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 11 / 71655 | 153 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 46 / 1100989 | 41 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 31 / 215722 | 143 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 11 / 211054 | 52 | |
| heart | 9 / 89626 | 100 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 26 / 336974 | 77 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 9 / 107715 | 83 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 17 / 102051 | 166 | |
| pancreas | 18 / 214812 | 83 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 19 / 189345 | 100 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 47 / 210574 | 223 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 5 / 96619 | 51 | |
| testis | 14 / 330442 | 42 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 9 / 13680 | 657 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 5 / 51780 | 96 | |
Microarray in - Probe name: A_24_P231250
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.03 ± 0.37 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.96 ± 0.39 | |
| Basal Part of Pons | 4.05 ± 0.49 | |
| Cerebellar Cortex | 4.08 ± 0.49 | |
| Cerebellar Nuclei | 3.84 ± 0.6 | |
| Claustrum | 3.91 ± 0.74 | |
| Epithalamus | 4.22 ± 0.51 | |
| Frontal Lobe | 3.99 ± 0.51 | |
| Globus Pallidus | 4.24 ± 0.73 | |
| Hypothalamus | 3.99 ± 0.34 | |
| Insula | 3.9 ± 0.38 | |
| Limbic Lobe | 4.18 ± 0.59 | |
| Mesencephalon | 4.05 ± 0.52 | |
| Myelencephalon | 4.08 ± 0.58 | |
| Occipital Lobe | 4.15 ± 0.56 | |
| Parietal Lobe | 3.94 ± 0.48 | |
| Pontine Tegmentum | 3.89 ± 0.51 | |
| Striatum | 4.22 ± 0.53 | |
| Subthalamus | 3.15 ± 0.64 | |
| Temporal Lobe | 4.07 ± 0.49 | |
| Thalamus | 4.07 ± 0.51 | |
| White Matter | 3.87 ± 0.73 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sepn1 | CB | Cerebellum | 75.41 | |
| 100 | | |||
| Sepn1 | CTX | Cerebral cortex | 42.53 | |
| 27.49 | | |||
| Sepn1 | HIP | Hippocampal region | 23.07 | |
| 21.49 | | |||
| Sepn1 | HPF | Hippocampal formation | 27.36 | |
| 22.18 | | |||
| Sepn1 | HY | Hypothalamus | 19.99 | |
| 13.94 | | |||
| Sepn1 | LSX | Lateral septal complex | 11.16 | |
| 7.53 | | |||
| Sepn1 | MB | Midbrain | 22.69 | |
| 19.55 | | |||
| Sepn1 | MY | Medulla | 24.94 | |
| 22.92 | | |||
| Sepn1 | OLF | Olfactory bulb | 59.18 | |
| 44.47 | | |||
| Sepn1 | P | Pons | 21.54 | |
| 18.11 | | |||
| Sepn1 | PAL | Pallidum | 21.2 | |
| 16.64 | | |||
| Sepn1 | RHP | Retrohippocampal region | 34.82 | |
| 23.25 | | |||
| Sepn1 | sAMY | Striatum-like amygdalar nuclei | 41.6 | |
| 28.1 | | |||
| Sepn1 | STR | Striatum | 17.8 | |
| 12.35 | | |||
| Sepn1 | STRd | Striatum dorsal region | 14.75 | |
| 10.5 | | |||
| Sepn1 | STRv | Striatum ventral region | 19.22 | |
| 12.77 | | |||
| Sepn1 | TH | Thalamus | 32.82 | |
| 23.18 | |