Annotation Detail for SLC45A4
Basic Information Top
| Gene Symbol: | SLC45A4 ( KIAA1126 ) |
|---|---|
| Gene Full Name: | solute carrier family 45, member 4 |
| Band: | 8q24.3 |
| Quick Links | Entrez ID:57210; OMIM: NA; Uniprot ID:C9JFW9_HUMAN; ENSEMBL ID: ENSG00000022567; HGNC ID: 29196 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.372492
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 4 / 62319 | 64 |  |
| fetus | 16 / 564012 | 28 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 51 / 1939121 | 26 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 11 / 114246 | 96 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 98 / 3360307 | 29 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 19 / 234472 | 81 | |
| kidney | 16 / 211777 | 75 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 12 / 330442 | 36 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_56_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.6 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.16 ± 0.7 | |
| Basal Part of Pons | 5.28 ± 0.48 | |
| Cerebellar Cortex | 4.71 ± 0.39 | |
| Cerebellar Nuclei | 4.56 ± 0.45 | |
| Claustrum | 4.03 ± 0.74 | |
| Epithalamus | 4.24 ± 0.65 | |
| Frontal Lobe | 4.58 ± 0.63 | |
| Globus Pallidus | 3.73 ± 0.59 | |
| Hypothalamus | 3.95 ± 0.46 | |
| Insula | 4.53 ± 0.46 | |
| Limbic Lobe | 4.88 ± 0.49 | |
| Mesencephalon | 4.53 ± 0.67 | |
| Myelencephalon | 4.53 ± 0.71 | |
| Occipital Lobe | 5.29 ± 0.43 | |
| Parietal Lobe | 4.94 ± 0.48 | |
| Pontine Tegmentum | 4.43 ± 0.6 | |
| Striatum | 3.66 ± 0.6 | |
| Subthalamus | 4.96 ± 0.36 | |
| Temporal Lobe | 4.6 ± 0.52 | |
| Thalamus | 4.29 ± 0.64 | |
| White Matter | 2.5 ± 1.14 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slc45a4 | CB | Cerebellum | 13.44 | |
| 14.75 | | |||
| Slc45a4 | CTX | Cerebral cortex | 23.64 | |
| 17.09 | | |||
| Slc45a4 | HIP | Hippocampal region | 13.17 | |
| 13.25 | | |||
| Slc45a4 | HPF | Hippocampal formation | 13.65 | |
| 12.3 | | |||
| Slc45a4 | HY | Hypothalamus | 5.48 | |
| 4.81 | | |||
| Slc45a4 | LSX | Lateral septal complex | 1.64 | |
| 1.14 | | |||
| Slc45a4 | MB | Midbrain | 13.01 | |
| 12.32 | | |||
| Slc45a4 | MY | Medulla | 19.04 | |
| 21.48 | | |||
| Slc45a4 | OLF | Olfactory bulb | 17 | |
| 12.03 | | |||
| Slc45a4 | P | Pons | 13.47 | |
| 15.19 | | |||
| Slc45a4 | PAL | Pallidum | 7.48 | |
| 6.89 | | |||
| Slc45a4 | RHP | Retrohippocampal region | 14.78 | |
| 11.26 | | |||
| Slc45a4 | sAMY | Striatum-like amygdalar nuclei | 9.58 | |
| 7.59 | | |||
| Slc45a4 | STR | Striatum | 5.25 | |
| 3.93 | | |||
| Slc45a4 | STRd | Striatum dorsal region | 3.97 | |
| 3.09 | | |||
| Slc45a4 | STRv | Striatum ventral region | 8.46 | |
| 5.53 | | |||
| Slc45a4 | TH | Thalamus | 20.01 | |
| 16.13 | |