Annotation Detail for ERGIC1
Basic Information Top
| Gene Symbol: | ERGIC1 ( ERGIC-32,ERGIC32,FLJ39864,KIAA1181,MGC14345,NET24 ) |
|---|---|
| Gene Full Name: | endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 |
| Band: | 5q35.1 |
| Quick Links | Entrez ID:57222; OMIM: NA; Uniprot ID:ERGI1_HUMAN; ENSEMBL ID: ENSG00000113719; HGNC ID: 29205 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.509163
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 4 / 62319 | 64 |  |
| fetus | 60 / 564012 | 106 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 6 / 55556 | 107 | |
| adult | 390 / 1939121 | 201 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 3 / 12794 | 234 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 25 / 94178 | 265 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 28 / 114246 | 245 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 14 / 263845 | 53 | |
| glioma | 13 / 106883 | 121 | |
| head and neck tumor | 10 / 136302 | 73 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 17 / 95842 | 177 | |
| liver tumor | 8 / 96359 | 83 | |
| lung tumor | 7 / 103127 | 67 | |
| lymphoma | 16 / 71755 | 222 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 403 / 3360307 | 119 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 21 / 104616 | 200 | |
| primitive neuroectodermal tumor of the CNS | 22 / 125680 | 175 | |
| prostate cancer | 47 / 102680 | 457 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 14 / 90257 | 155 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 9 / 33197 | 271 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 21 / 123478 | 170 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 58 / 1100989 | 52 | |
| cervix | 5 / 48171 | 103 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 3 / 16212 | 185 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 16 / 211054 | 75 | |
| heart | 9 / 89626 | 100 | |
| intestine | 49 / 234472 | 208 | |
| kidney | 20 / 211777 | 94 | |
| larynx | 0 / 24145 | 0 | |
| liver | 18 / 207743 | 86 | |
| lung | 57 / 336974 | 169 | |
| lymph | 9 / 44270 | 203 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 32 / 153271 | 208 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 8 / 107715 | 74 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 9 / 102051 | 88 | |
| pancreas | 22 / 214812 | 102 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 5 / 41328 | 120 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 23 / 280825 | 81 | |
| prostate | 165 / 189345 | 871 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 27 / 210574 | 128 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 10 / 96619 | 103 | |
| testis | 17 / 330442 | 51 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 34 / 232878 | 145 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P97770
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.8 ± 0.5 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.48 ± 0.57 | |
| Basal Part of Pons | 4.8 ± 0.58 | |
| Cerebellar Cortex | 5.26 ± 0.31 | |
| Cerebellar Nuclei | 4.29 ± 0.37 | |
| Claustrum | 4.46 ± 0.8 | |
| Epithalamus | 4.64 ± 0.54 | |
| Frontal Lobe | 4.76 ± 0.46 | |
| Globus Pallidus | 4.45 ± 0.51 | |
| Hypothalamus | 4.19 ± 0.5 | |
| Insula | 4.72 ± 0.43 | |
| Limbic Lobe | 4.98 ± 0.5 | |
| Mesencephalon | 4.59 ± 0.57 | |
| Myelencephalon | 4.78 ± 0.56 | |
| Occipital Lobe | 5.05 ± 0.63 | |
| Parietal Lobe | 4.77 ± 0.49 | |
| Pontine Tegmentum | 4.81 ± 0.55 | |
| Striatum | 4.54 ± 0.65 | |
| Subthalamus | 4.43 ± 0.41 | |
| Temporal Lobe | 4.8 ± 0.48 | |
| Thalamus | 4.93 ± 0.53 | |
| White Matter | 3.77 ± 0.63 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 1200007D18Rik | CB | Cerebellum | 30.31 | |
| 47.03 | | |||
| 1200007D18Rik | CTX | Cerebral cortex | 53.88 | |
| 38.27 | | |||
| 1200007D18Rik | HIP | Hippocampal region | 61.09 | |
| 62.08 | | |||
| 1200007D18Rik | HPF | Hippocampal formation | 65.21 | |
| 58.4 | | |||
| 1200007D18Rik | HY | Hypothalamus | 66.99 | |
| 45.02 | | |||
| 1200007D18Rik | LSX | Lateral septal complex | 39.07 | |
| 24.14 | | |||
| 1200007D18Rik | MB | Midbrain | 44.77 | |
| 32.33 | | |||
| 1200007D18Rik | MY | Medulla | 52.47 | |
| 52.51 | | |||
| 1200007D18Rik | OLF | Olfactory bulb | 65.64 | |
| 49.87 | | |||
| 1200007D18Rik | P | Pons | 49.9 | |
| 46.41 | | |||
| 1200007D18Rik | PAL | Pallidum | 28.44 | |
| 23.52 | | |||
| 1200007D18Rik | RHP | Retrohippocampal region | 74.98 | |
| 54.48 | | |||
| 1200007D18Rik | sAMY | Striatum-like amygdalar nuclei | 31.04 | |
| 18.8 | | |||
| 1200007D18Rik | STR | Striatum | 19.39 | |
| 11.68 | | |||
| 1200007D18Rik | STRd | Striatum dorsal region | 15.34 | |
| 9.48 | | |||
| 1200007D18Rik | STRv | Striatum ventral region | 19.75 | |
| 10.65 | | |||
| 1200007D18Rik | TH | Thalamus | 55.46 | |
| 44.43 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00005324 | 24 | 153 | 176 | LSFGDTLQVQNIHGAFNALGGADR | Peptide Atlas |