Annotation Detail for NHSL1
Basic Information Top
| Gene Symbol: | NHSL1 ( C6orf63,KIAA1357 ) |
|---|---|
| Gene Full Name: | NHS-like 1 |
| Band: | 6q24.1 |
| Quick Links | Entrez ID:57224; OMIM: NA; Uniprot ID:NHSL1_HUMAN; ENSEMBL ID: ENSG00000135540; HGNC ID: 21021 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.652741
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 27 / 564012 | 47 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 41 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 74 / 3360307 | 22 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 4 / 40015 | 99 |  |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 26 / 1100989 | 23 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 14 / 234472 | 59 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 10 / 336974 | 29 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P387184
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.68 ± 0.41 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.54 ± 0.39 | |
| Basal Part of Pons | 3.37 ± 0.42 | |
| Cerebellar Cortex | 4.69 ± 0.5 | |
| Cerebellar Nuclei | 3.82 ± 0.45 | |
| Claustrum | 4.21 ± 0.66 | |
| Epithalamus | 4.66 ± 0.61 | |
| Frontal Lobe | 4.3 ± 0.7 | |
| Globus Pallidus | 6.11 ± 0.77 | |
| Hypothalamus | 4.13 ± 0.47 | |
| Insula | 4.43 ± 0.49 | |
| Limbic Lobe | 5.03 ± 0.71 | |
| Mesencephalon | 4.72 ± 0.66 | |
| Myelencephalon | 4.59 ± 0.75 | |
| Occipital Lobe | 4.64 ± 0.86 | |
| Parietal Lobe | 4.4 ± 0.84 | |
| Pontine Tegmentum | 4.82 ± 0.54 | |
| Striatum | 5.1 ± 0.72 | |
| Subthalamus | 3.69 ± 0.93 | |
| Temporal Lobe | 4.41 ± 0.61 | |
| Thalamus | 4.91 ± 0.56 | |
| White Matter | 3.64 ± 0.63 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nhsl1 | CB | Cerebellum | 20.67 | |
| 31.71 | | |||
| Nhsl1 | CTX | Cerebral cortex | 11.23 | |
| 8.6 | | |||
| Nhsl1 | HIP | Hippocampal region | 24.6 | |
| 44.55 | | |||
| Nhsl1 | HPF | Hippocampal formation | 20.6 | |
| 31.87 | | |||
| Nhsl1 | HY | Hypothalamus | 3.98 | |
| 3.23 | | |||
| Nhsl1 | LSX | Lateral septal complex | 2.7 | |
| 2.21 | | |||
| Nhsl1 | MB | Midbrain | 6.18 | |
| 6.38 | | |||
| Nhsl1 | MY | Medulla | 15.67 | |
| 16.56 | | |||
| Nhsl1 | OLF | Olfactory bulb | 31.09 | |
| 23.15 | | |||
| Nhsl1 | P | Pons | 10.37 | |
| 12.11 | | |||
| Nhsl1 | PAL | Pallidum | 6.33 | |
| 5.42 | | |||
| Nhsl1 | RHP | Retrohippocampal region | 10.33 | |
| 8.27 | | |||
| Nhsl1 | sAMY | Striatum-like amygdalar nuclei | 16.11 | |
| 13.78 | | |||
| Nhsl1 | STR | Striatum | 5.46 | |
| 4.23 | | |||
| Nhsl1 | STRd | Striatum dorsal region | 3.57 | |
| 2.9 | | |||
| Nhsl1 | STRv | Striatum ventral region | 7.31 | |
| 4.45 | | |||
| Nhsl1 | TH | Thalamus | 13.25 | |
| 12.47 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00501206 | 27 | 220 | 246 | ELASGTGQDDADGHSVYTPDHYSTLGR | Peptide Atlas |