Annotation Detail for SNX14
Basic Information Top
| Gene Symbol: | SNX14 ( MGC13217,RGS-PX2 ) |
|---|---|
| Gene Full Name: | sorting nexin 14 |
| Band: | 6q14.3 |
| Quick Links | Entrez ID:57231; OMIM: NA; Uniprot ID:SNX14_HUMAN; ENSEMBL ID: ENSG00000135317; HGNC ID: 14977 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.485871
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 35 / 564012 | 62 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 5 / 55556 | 89 | |
| adult | 134 / 1939121 | 69 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 12 / 136302 | 88 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 7 / 96359 | 72 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 10 / 97250 | 102 | |
| normal | 193 / 3360307 | 57 | |
| ovarian tumor | 9 / 76682 | 117 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 7 / 90257 | 77 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 5 / 40015 | 124 | |
| bladder | 1 / 29757 | 33 | |
| blood | 9 / 123478 | 72 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 58 / 1100989 | 52 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 13 / 149255 | 87 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 9 / 211054 | 42 | |
| heart | 3 / 89626 | 33 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 15 / 211777 | 70 | |
| larynx | 0 / 24145 | 0 | |
| liver | 12 / 207743 | 57 | |
| lung | 18 / 336974 | 53 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 12 / 102051 | 117 | |
| pancreas | 11 / 214812 | 51 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 6 / 210574 | 28 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 5 / 96619 | 51 | |
| testis | 70 / 330442 | 211 |  |
| thymus | 7 / 81131 | 86 | |
| thyroid | 10 / 47473 | 210 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 6 / 52413 | 114 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 18 / 232878 | 77 | |
| vascular | 5 / 51780 | 96 | |
Microarray in - Probe name: CUST_1017_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.61 ± 0.2 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.52 ± 0.18 | |
| Basal Part of Pons | 8.66 ± 0.26 | |
| Cerebellar Cortex | 8.76 ± 0.23 | |
| Cerebellar Nuclei | 8.9 ± 0.33 | |
| Claustrum | 8.63 ± 0.36 | |
| Epithalamus | 8.83 ± 0.24 | |
| Frontal Lobe | 8.66 ± 0.25 | |
| Globus Pallidus | 8.51 ± 0.22 | |
| Hypothalamus | 8.83 ± 0.36 | |
| Insula | 8.61 ± 0.21 | |
| Limbic Lobe | 8.57 ± 0.34 | |
| Mesencephalon | 8.69 ± 0.33 | |
| Myelencephalon | 8.58 ± 0.27 | |
| Occipital Lobe | 8.64 ± 0.32 | |
| Parietal Lobe | 8.65 ± 0.26 | |
| Pontine Tegmentum | 8.61 ± 0.29 | |
| Striatum | 8.12 ± 0.25 | |
| Subthalamus | 9.01 ± 0.21 | |
| Temporal Lobe | 8.64 ± 0.27 | |
| Thalamus | 8.53 ± 0.22 | |
| White Matter | 8.86 ± 0.33 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Snx14 | CB | Cerebellum | 57.04 | |
| 100 | | |||
| Snx14 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Snx14 | HIP | Hippocampal region | 86.12 | |
| 100 | | |||
| Snx14 | HPF | Hippocampal formation | 93.4 | |
| 100 | | |||
| Snx14 | HY | Hypothalamus | 100 | |
| 97.91 | | |||
| Snx14 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Snx14 | MB | Midbrain | 100 | |
| 100 | | |||
| Snx14 | MY | Medulla | 93.9 | |
| 100 | | |||
| Snx14 | OLF | Olfactory bulb | 94.28 | |
| 100 | | |||
| Snx14 | P | Pons | 92.53 | |
| 100 | | |||
| Snx14 | PAL | Pallidum | 97.16 | |
| 100 | | |||
| Snx14 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Snx14 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 93.93 | | |||
| Snx14 | STR | Striatum | 100 | |
| 99.05 | | |||
| Snx14 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Snx14 | STRv | Striatum ventral region | 100 | |
| 85.94 | | |||
| Snx14 | TH | Thalamus | 100 | |
| 100 | |