AutismKB 2.0

Annotation Detail for CYP20A1


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Basic Information Top
Gene Symbol:CYP20A1 ( CYP-M,MGC22229 )
Gene Full Name: cytochrome P450, family 20, subfamily A, polypeptide 1
Band: 2q33.2
Quick LinksEntrez ID:57404; OMIM: NA; Uniprot ID:CP20A_HUMAN; ENSEMBL ID: ENSG00000119004; HGNC ID: 20576
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus12 / 56401221
neonate2 / 3109764
infant0 / 236200 
juvenile0 / 555560 
adult56 / 193912128
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor5 / 26384518
glioma2 / 10688318
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia3 / 9584231
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma3 / 7175541
non-neoplasia2 / 9725020
normal100 / 336030729
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites0 / 400150 
bladder1 / 2975733
blood10 / 12347880
bone4 / 7165555
bone marrow1 / 4880120
brain15 / 110098913
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye4 / 21105418
heart2 / 8962622
intestine4 / 23447217
kidney6 / 21177728
larynx0 / 241450 
liver3 / 20774314
lung10 / 33697429
lymph1 / 4427022
lymph node2 / 9161021
mammary gland4 / 15327126
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary2 / 10205119
pancreas7 / 21481232
parathyroid2 / 2053997
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta7 / 28082524
prostate3 / 18934515
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach2 / 9661920
testis17 / 33044251
thymus0 / 811310 
thyroid4 / 4747384
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord1 / 1368073
uterus1 / 2328784
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219565_at
Cell line Expression level Expression bar
721_B_lymphoblasts7.4
Adipocyte5.35
AdrenalCortex6.05
Adrenalgland4.7
Amygdala5.45
Appendix5.85
AtrioventricularNode4.55
BDCA4+_DentriticCells22.25
Bonemarrow5.55
BronchialEpithelialCells5.2
CD105+_Endothelial5.55
CD14+_Monocytes6.8
CD19+_BCells(neg._sel.)13.3
CD33+_Myeloid13
CD34+14.7
CD4+_Tcells6.25
CD56+_NKCells6.7
CD71+_EarlyErythroid5.45
CD8+_Tcells6.8
CardiacMyocytes8.85
Caudatenucleus4.85
Cerebellum4.45
CerebellumPeduncles6.25
CiliaryGanglion4.15
CingulateCortex5.55
Colorectaladenocarcinoma5.55
DorsalRootGanglion4.4
FetalThyroid5.4
Fetalbrain5.2
Fetalliver4.7
Fetallung4.3
GlobusPallidus4.05
Heart7.65
Hypothalamus5.7
Kidney4.55
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.8
Leukemialymphoblastic(MOLT-4)4.3
Liver7.5
Lung5.9
Lymphnode4.45
Lymphoma_burkitts(Daudi)7
Lymphoma_burkitts(Raji)7.95
MedullaOblongata4.75
OccipitalLobe4.8
OlfactoryBulb4.25
Ovary3.65
Pancreas4.45
PancreaticIslet5.95
ParietalLobe5.8
Pituitary6.25
Placenta5.6
Pons5.2
PrefrontalCortex6.45
Prostate6.2
Salivarygland4.45
SkeletalMuscle6.9
Skin4.4
SmoothMuscle6.2
Spinalcord5.75
SubthalamicNucleus5
SuperiorCervicalGanglion6.7
TemporalLobe5
Testis4.6
TestisGermCell4.55
TestisIntersitial5.25
TestisLeydigCell5.45
TestisSeminiferousTubule4.6
Thalamus5.55
Thymus4.4
Thyroid7
Tongue5.5
Tonsil5.35
Trachea4.5
TrigeminalGanglion5.9
Uterus4.45
UterusCorpus5.05
WholeBlood5.9
Wholebrain4.3
colon5.5
pineal_day6.7
pineal_night6.68
retina6.75
small_intestine5.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P110433
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.26 ± 0.81
Basal Forebrain4.05 ± 0.33
Basal Part of Pons3.66 ± 0.41
Cerebellar Cortex4.43 ± 0.49
Cerebellar Nuclei4.07 ± 0.66
Claustrum3.71 ± 0.83
Epithalamus4.21 ± 0.71
Frontal Lobe4.22 ± 0.59
Globus Pallidus5.19 ± 0.35
Hypothalamus4.07 ± 0.54
Insula4.22 ± 0.19
Limbic Lobe4.04 ± 0.59
Mesencephalon4.33 ± 0.65
Myelencephalon4.2 ± 0.61
Occipital Lobe4.19 ± 0.61
Parietal Lobe4.1 ± 0.64
Pontine Tegmentum4.27 ± 0.57
Striatum4.41 ± 0.67
Subthalamus4.47 ± 0.51
Temporal Lobe4.12 ± 0.52
Thalamus4.17 ± 0.58
White Matter5.71 ± 0.39
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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