Annotation Detail for NMRAL1
Basic Information Top
| Gene Symbol: | NMRAL1 ( FLJ25918,HSCARG,SDR48A1 ) |
|---|---|
| Gene Full Name: | NmrA-like family domain containing 1 |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:57407; OMIM: NA; Uniprot ID:NMRL1_HUMAN; ENSEMBL ID: ENSG00000153406; HGNC ID: 24987 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.288969
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 16 / 564012 | 28 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 82 / 1939121 | 42 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 9 / 94178 | 95 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 10 / 103127 | 96 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 105 / 3360307 | 31 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 9 / 104616 | 86 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 11 / 102680 | 107 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 11 / 124949 | 88 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 23 / 1100989 | 20 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 15 / 211054 | 71 | |
| heart | 1 / 89626 | 11 | |
| intestine | 18 / 234472 | 76 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 1 / 24145 | 41 | |
| liver | 8 / 207743 | 38 | |
| lung | 21 / 336974 | 62 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 10 / 153271 | 65 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 14 / 214812 | 65 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 11 / 280825 | 39 | |
| prostate | 14 / 189345 | 73 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 18 / 210574 | 85 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P26649
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.46 ± 0.3 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.89 ± 0.26 | |
| Basal Part of Pons | 9.06 ± 0.24 | |
| Cerebellar Cortex | 8.36 ± 0.18 | |
| Cerebellar Nuclei | 8.71 ± 0.31 | |
| Claustrum | 8.69 ± 0.52 | |
| Epithalamus | 8.52 ± 0.31 | |
| Frontal Lobe | 8.78 ± 0.26 | |
| Globus Pallidus | 9.15 ± 0.1 | |
| Hypothalamus | 8.6 ± 0.22 | |
| Insula | 8.7 ± 0.18 | |
| Limbic Lobe | 8.7 ± 0.22 | |
| Mesencephalon | 8.61 ± 0.31 | |
| Myelencephalon | 8.66 ± 0.34 | |
| Occipital Lobe | 8.37 ± 0.26 | |
| Parietal Lobe | 8.68 ± 0.27 | |
| Pontine Tegmentum | 8.66 ± 0.26 | |
| Striatum | 8.71 ± 0.28 | |
| Subthalamus | 8.68 ± 0.05 | |
| Temporal Lobe | 8.75 ± 0.26 | |
| Thalamus | 8.67 ± 0.25 | |
| White Matter | 9.62 ± 0.17 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nmral1 | CB | Cerebellum | 0.58 | |
| 0.67 | | |||
| Nmral1 | CTX | Cerebral cortex | 0.59 | |
| 0.56 | | |||
| Nmral1 | HIP | Hippocampal region | 0.72 | |
| 0.57 | | |||
| Nmral1 | HPF | Hippocampal formation | 0.54 | |
| 0.47 | | |||
| Nmral1 | HY | Hypothalamus | 0.16 | |
| 0.12 | | |||
| Nmral1 | LSX | Lateral septal complex | 0.85 | |
| 0.86 | | |||
| Nmral1 | MB | Midbrain | 0.48 | |
| 0.43 | | |||
| Nmral1 | MY | Medulla | 1.03 | |
| 1.09 | | |||
| Nmral1 | OLF | Olfactory bulb | 0.67 | |
| 0.76 | | |||
| Nmral1 | P | Pons | 0.59 | |
| 0.57 | | |||
| Nmral1 | PAL | Pallidum | 0.43 | |
| 0.29 | | |||
| Nmral1 | RHP | Retrohippocampal region | 0.21 | |
| 0.31 | | |||
| Nmral1 | sAMY | Striatum-like amygdalar nuclei | 0.18 | |
| 0.15 | | |||
| Nmral1 | STR | Striatum | 0.77 | |
| 0.57 | | |||
| Nmral1 | STRd | Striatum dorsal region | 0.92 | |
| 0.72 | | |||
| Nmral1 | STRv | Striatum ventral region | 0.53 | |
| 0.26 | | |||
| Nmral1 | TH | Thalamus | 0.46 | |
| 0.42 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| NMRL1_HUMAN_2 | 21 | 2 | 22 | VDKKLVVVFGGTGAQGGSVAR | PRIDE |