Annotation Detail for SCYL1
Basic Information Top
| Gene Symbol: | SCYL1 ( GKLP,MGC78454,NKTL,NTKL,P105,TAPK,TEIF,TRAP ) |
|---|---|
| Gene Full Name: | SCY1-like 1 (S. cerevisiae) |
| Band: | 11q13.1 |
| Quick Links | Entrez ID:57410; OMIM: 607982; Uniprot ID:NTKL_HUMAN; ENSEMBL ID: ENSG00000142186; HGNC ID: 14372 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.238839
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 7 / 62319 | 112 | |
| fetus | 31 / 564012 | 54 | |
| neonate | 1 / 31097 | 32 |  |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 160 / 1939121 | 82 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 16 / 114246 | 140 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 17 / 263845 | 64 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 10 / 68959 | 145 | |
| leukemia | 17 / 95842 | 177 | |
| liver tumor | 10 / 96359 | 103 | |
| lung tumor | 12 / 103127 | 116 | |
| lymphoma | 7 / 71755 | 97 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 181 / 3360307 | 53 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 13 / 104616 | 124 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 14 / 102680 | 136 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 33 / 124949 | 264 |  |
| soft tissue/muscle tissue tumor | 12 / 125191 | 95 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 4 / 13106 | 305 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 16 / 48801 | 327 | |
| brain | 37 / 1100989 | 33 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 7 / 149255 | 46 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 21 / 211054 | 99 | |
| heart | 7 / 89626 | 78 | |
| intestine | 24 / 234472 | 102 | |
| kidney | 15 / 211777 | 70 | |
| larynx | 0 / 24145 | 0 | |
| liver | 15 / 207743 | 72 | |
| lung | 33 / 336974 | 97 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 23 / 91610 | 251 | |
| mammary gland | 12 / 153271 | 78 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 9 / 107715 | 83 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 13 / 214812 | 60 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 22 / 280825 | 78 | |
| prostate | 23 / 189345 | 121 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 45 / 210574 | 213 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 5 / 96619 | 51 | |
| testis | 17 / 330442 | 51 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 16 / 232878 | 68 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P75470
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.02 ± 0.33 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.7 ± 0.37 | |
| Basal Part of Pons | 6.1 ± 0.29 | |
| Cerebellar Cortex | 5.87 ± 0.41 | |
| Cerebellar Nuclei | 5.69 ± 0.37 | |
| Claustrum | 5.71 ± 0.55 | |
| Epithalamus | 5.62 ± 0.71 | |
| Frontal Lobe | 5.94 ± 0.39 | |
| Globus Pallidus | 5.16 ± 0.28 | |
| Hypothalamus | 5.53 ± 0.52 | |
| Insula | 5.83 ± 0.24 | |
| Limbic Lobe | 5.98 ± 0.33 | |
| Mesencephalon | 5.64 ± 0.49 | |
| Myelencephalon | 5.76 ± 0.45 | |
| Occipital Lobe | 5.58 ± 0.36 | |
| Parietal Lobe | 5.82 ± 0.38 | |
| Pontine Tegmentum | 5.76 ± 0.38 | |
| Striatum | 5.34 ± 0.35 | |
| Subthalamus | 5.6 ± 0.18 | |
| Temporal Lobe | 5.91 ± 0.33 | |
| Thalamus | 5.72 ± 0.38 | |
| White Matter | 5 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Scyl1 | CB | Cerebellum | 52.94 | |
| 69.99 | | |||
| Scyl1 | CTX | Cerebral cortex | 100 | |
| 93.98 | | |||
| Scyl1 | HIP | Hippocampal region | 59.05 | |
| 82.85 | | |||
| Scyl1 | HPF | Hippocampal formation | 78.68 | |
| 93.64 | | |||
| Scyl1 | HY | Hypothalamus | 69.82 | |
| 62.19 | | |||
| Scyl1 | LSX | Lateral septal complex | 48.2 | |
| 38.49 | | |||
| Scyl1 | MB | Midbrain | 73.09 | |
| 70.59 | | |||
| Scyl1 | MY | Medulla | 81.43 | |
| 100 | | |||
| Scyl1 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Scyl1 | P | Pons | 76.92 | |
| 91.14 | | |||
| Scyl1 | PAL | Pallidum | 59.88 | |
| 64.83 | | |||
| Scyl1 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Scyl1 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 89.35 | | |||
| Scyl1 | STR | Striatum | 81.26 | |
| 64.84 | | |||
| Scyl1 | STRd | Striatum dorsal region | 81.21 | |
| 63.32 | | |||
| Scyl1 | STRv | Striatum ventral region | 88.41 | |
| 69.51 | | |||
| Scyl1 | TH | Thalamus | 87.74 | |
| 83.45 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00024449 | 17 | 88 | 104 | CLHVVTEAVTPLGIYLK | Peptide Atlas |