Annotation Detail for REXO1
Basic Information Top
| Gene Symbol: | REXO1 ( ELOABP1,EloA-BP1,KIAA1138,REX1,TCEB3BP1 ) |
|---|---|
| Gene Full Name: | REX1, RNA exonuclease 1 homolog (S. cerevisiae) |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:57455; OMIM: 609614; Uniprot ID:REXO1_HUMAN; ENSEMBL ID: ENSG00000079313; HGNC ID: 24616 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.192477
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 4 / 62319 | 64 |  |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 43 / 1939121 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 98 / 3360307 | 29 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 3 / 29757 | 100 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 20 / 1100989 | 18 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 12 / 211054 | 56 | |
| heart | 0 / 89626 | 0 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 3 / 24145 | 124 | |
| liver | 1 / 207743 | 4 | |
| lung | 5 / 336974 | 14 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 0 / 96619 | 0 | |
| testis | 25 / 330442 | 75 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1232_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.29 ± 0.89 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.72 ± 0.21 | |
| Basal Part of Pons | 3.89 ± 0.5 | |
| Cerebellar Cortex | 3.47 ± 0.57 | |
| Cerebellar Nuclei | 3.51 ± 0.55 | |
| Claustrum | 4.91 ± 0.86 | |
| Epithalamus | 3.33 ± 0.65 | |
| Frontal Lobe | 3.73 ± 0.66 | |
| Globus Pallidus | 3.56 ± 0.68 | |
| Hypothalamus | 3.1 ± 0.66 | |
| Insula | 3.68 ± 0.67 | |
| Limbic Lobe | 4.23 ± 0.78 | |
| Mesencephalon | 3.92 ± 0.7 | |
| Myelencephalon | 4.04 ± 0.73 | |
| Occipital Lobe | 4.6 ± 0.8 | |
| Parietal Lobe | 4.06 ± 0.66 | |
| Pontine Tegmentum | 3.98 ± 0.79 | |
| Striatum | 4.98 ± 0.52 | |
| Subthalamus | 3.59 ± 1.08 | |
| Temporal Lobe | 3.93 ± 0.6 | |
| Thalamus | 4.13 ± 0.61 | |
| White Matter | 3.25 ± 0.7 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rexo1 | CB | Cerebellum | 28.14 | |
| 30.57 | | |||
| Rexo1 | CTX | Cerebral cortex | 61.35 | |
| 47.19 | | |||
| Rexo1 | HIP | Hippocampal region | 35.3 | |
| 45.7 | | |||
| Rexo1 | HPF | Hippocampal formation | 35.19 | |
| 37 | | |||
| Rexo1 | HY | Hypothalamus | 11.68 | |
| 8.89 | | |||
| Rexo1 | LSX | Lateral septal complex | 42.87 | |
| 33.42 | | |||
| Rexo1 | MB | Midbrain | 18.63 | |
| 15.95 | | |||
| Rexo1 | MY | Medulla | 21.86 | |
| 21.55 | | |||
| Rexo1 | OLF | Olfactory bulb | 61.43 | |
| 50.13 | | |||
| Rexo1 | P | Pons | 18.03 | |
| 17.07 | | |||
| Rexo1 | PAL | Pallidum | 25.53 | |
| 21.19 | | |||
| Rexo1 | RHP | Retrohippocampal region | 34.97 | |
| 26.35 | | |||
| Rexo1 | sAMY | Striatum-like amygdalar nuclei | 17.47 | |
| 11.54 | | |||
| Rexo1 | STR | Striatum | 37.97 | |
| 26.6 | | |||
| Rexo1 | STRd | Striatum dorsal region | 36.14 | |
| 25.17 | | |||
| Rexo1 | STRv | Striatum ventral region | 47.27 | |
| 32.03 | | |||
| Rexo1 | TH | Thalamus | 26.29 | |
| 21.43 | |