Annotation Detail for FAM40B
Basic Information Top
| Gene Symbol: | FAM40B ( - ) |
|---|---|
| Gene Full Name: | family with sequence similarity 40, member B |
| Band: | 7q32.1 |
| Quick Links | Entrez ID:57464; OMIM: NA; Uniprot ID:FA40B_HUMAN; ENSEMBL ID: ENSG00000128578; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.489988
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 13 / 564012 | 23 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 38 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 9 / 82823 | 108 |  |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 44 / 3360307 | 13 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 12 / 90257 | 132 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 20 / 1100989 | 18 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 2 / 89626 | 22 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 1 / 24145 | 41 | |
| liver | 0 / 207743 | 0 | |
| lung | 2 / 336974 | 5 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 9 / 330442 | 27 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_32_P233735
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.73 ± 0.84 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.84 ± 1.04 | |
| Basal Part of Pons | 6.1 ± 0.75 | |
| Cerebellar Cortex | 4.97 ± 0.34 | |
| Cerebellar Nuclei | 4.43 ± 0.73 | |
| Claustrum | 4.35 ± 1.3 | |
| Epithalamus | 4.86 ± 0.91 | |
| Frontal Lobe | 5.22 ± 0.78 | |
| Globus Pallidus | 4.46 ± 1 | |
| Hypothalamus | 5.42 ± 0.9 | |
| Insula | 5.41 ± 0.54 | |
| Limbic Lobe | 4.67 ± 0.85 | |
| Mesencephalon | 5.27 ± 1.01 | |
| Myelencephalon | 5.15 ± 1.03 | |
| Occipital Lobe | 5.12 ± 0.89 | |
| Parietal Lobe | 4.97 ± 0.58 | |
| Pontine Tegmentum | 5.09 ± 0.77 | |
| Striatum | 7.75 ± 0.95 | |
| Subthalamus | 4.71 ± 0.21 | |
| Temporal Lobe | 5.28 ± 0.58 | |
| Thalamus | 5.87 ± 0.87 | |
| White Matter | 2 ± 0.54 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| D330017J20Rik | CB | Cerebellum | 24.44 | |
| 100 | | |||
| D330017J20Rik | CTX | Cerebral cortex | 9.47 | |
| 9.21 | | |||
| D330017J20Rik | HIP | Hippocampal region | 16.32 | |
| 30.2 | | |||
| D330017J20Rik | HPF | Hippocampal formation | 10.83 | |
| 17.92 | | |||
| D330017J20Rik | HY | Hypothalamus | 4.69 | |
| 4.17 | | |||
| D330017J20Rik | LSX | Lateral septal complex | 19.86 | |
| 19.12 | | |||
| D330017J20Rik | MB | Midbrain | 15.12 | |
| 16.35 | | |||
| D330017J20Rik | MY | Medulla | 25.13 | |
| 38.22 | | |||
| D330017J20Rik | OLF | Olfactory bulb | 18.99 | |
| 19.44 | | |||
| D330017J20Rik | P | Pons | 10.27 | |
| 12.93 | | |||
| D330017J20Rik | PAL | Pallidum | 14.22 | |
| 17.44 | | |||
| D330017J20Rik | RHP | Retrohippocampal region | 2.37 | |
| 2.11 | | |||
| D330017J20Rik | sAMY | Striatum-like amygdalar nuclei | 16.3 | |
| 25.42 | | |||
| D330017J20Rik | STR | Striatum | 78.1 | |
| 84.16 | | |||
| D330017J20Rik | STRd | Striatum dorsal region | 81.27 | |
| 80.82 | | |||
| D330017J20Rik | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| D330017J20Rik | TH | Thalamus | 9.68 | |
| 10.62 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00078639 | 18 | 366 | 383 | TEEPATEEEEESAGDGER | Peptide Atlas |