AutismKB 2.0

Annotation Detail for GRAMD1B


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Basic Information Top
Gene Symbol:GRAMD1B ( KIAA1201,MGC125622,MGC125623,MGC125625 )
Gene Full Name: GRAM domain containing 1B
Band: 11q24.1
Quick LinksEntrez ID:57476; OMIM: NA; Uniprot ID:GRM1B_HUMAN; ENSEMBL ID: ENSG00000023171; HGNC ID: 29214
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus13 / 56401223
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult76 / 193912139
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor5 / 11424643
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor7 / 26384526
glioma1 / 1068839
head and neck tumor1 / 1363027
kidney tumor4 / 6895958
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor7 / 10312767
lymphoma2 / 7175527
non-neoplasia2 / 9725020
normal91 / 336030727
ovarian tumor7 / 7668291
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone2 / 7165527
bone marrow0 / 488010 
brain35 / 110098931
cervix7 / 48171145
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye12 / 21105456
heart0 / 896260 
intestine5 / 23447221
kidney12 / 21177756
larynx0 / 241450 
liver1 / 2077434
lung12 / 33697435
lymph1 / 4427022
lymph node3 / 9161032
mammary gland1 / 1532716
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary9 / 10205188
pancreas6 / 21481227
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta16 / 28082556
prostate3 / 18934515
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach1 / 9661910
testis11 / 33044233
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212906_at
Cell line Expression level Expression bar
721_B_lymphoblasts40.95
Adipocyte52.25
AdrenalCortex574.2
Adrenalgland293.45
Amygdala348.45
Appendix39.25
AtrioventricularNode49.95
BDCA4+_DentriticCells308.95
Bonemarrow38.75
BronchialEpithelialCells34.1
CD105+_Endothelial25.05
CD14+_Monocytes44.85
CD19+_BCells(neg._sel.)33.2
CD33+_Myeloid81.05
CD34+47.4
CD4+_Tcells54.9
CD56+_NKCells35.15
CD71+_EarlyErythroid29.3
CD8+_Tcells34.2
CardiacMyocytes93.15
Caudatenucleus178.95
Cerebellum248.6
CerebellumPeduncles521.75
CiliaryGanglion59.2
CingulateCortex191.8
Colorectaladenocarcinoma34
DorsalRootGanglion99.7
FetalThyroid39.65
Fetalbrain253.7
Fetalliver41.95
Fetallung28.3
GlobusPallidus165.05
Heart93.85
Hypothalamus117.6
Kidney80.7
Leukemia_chronicMyelogenousK-56268.85
Leukemia_promyelocytic-HL-6056.9
Leukemialymphoblastic(MOLT-4)47.4
Liver65.6
Lung54.7
Lymphnode49.85
Lymphoma_burkitts(Daudi)86.7
Lymphoma_burkitts(Raji)66.5
MedullaOblongata124.7
OccipitalLobe166.45
OlfactoryBulb245.05
Ovary56.25
Pancreas29.55
PancreaticIslet78.4
ParietalLobe143.65
Pituitary92.9
Placenta78.05
Pons170.45
PrefrontalCortex362.75
Prostate41.15
Salivarygland30.65
SkeletalMuscle54.2
Skin29.35
SmoothMuscle65
Spinalcord129.55
SubthalamicNucleus182.65
SuperiorCervicalGanglion83.5
TemporalLobe167.1
Testis94.1
TestisGermCell93.7
TestisIntersitial84.55
TestisLeydigCell89.9
TestisSeminiferousTubule90.85
Thalamus201.1
Thymus55.45
Thyroid50
Tongue56.3
Tonsil45.15
Trachea28.45
TrigeminalGanglion85.05
Uterus47.55
UterusCorpus36.2
WholeBlood38.5
Wholebrain192.95
colon24
pineal_day410.14
pineal_night551.66
retina234.775
small_intestine88
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P58620
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.09 ± 0.4
Basal Forebrain7.65 ± 0.14
Basal Part of Pons8.55 ± 0.28
Cerebellar Cortex8.57 ± 0.17
Cerebellar Nuclei8.2 ± 0.54
Claustrum8.02 ± 0.62
Epithalamus7.17 ± 0.46
Frontal Lobe8.05 ± 0.45
Globus Pallidus7.27 ± 0.14
Hypothalamus7.25 ± 0.28
Insula7.88 ± 0.35
Limbic Lobe8.47 ± 0.43
Mesencephalon7.83 ± 0.51
Myelencephalon8.02 ± 0.45
Occipital Lobe8.76 ± 0.59
Parietal Lobe8.22 ± 0.35
Pontine Tegmentum8.09 ± 0.41
Striatum7.72 ± 0.28
Subthalamus7.67 ± 0.08
Temporal Lobe7.99 ± 0.39
Thalamus8.23 ± 0.41
White Matter6.03 ± 0.3
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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