Annotation Detail for ARID1B
Basic Information Top
| Gene Symbol: | ARID1B ( 6A3-5,BAF250B,BRIGHT,DAN15,ELD/OSA1,KIAA1235,OSA2,P250R ) |
|---|---|
| Gene Full Name: | AT rich interactive domain 1B (SWI1-like) |
| Band: | 6q25.3 |
| Quick Links | Entrez ID:57492; OMIM: NA; Uniprot ID:ARI1B_HUMAN; ENSEMBL ID: ENSG00000049618; HGNC ID: 18040 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.724539
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 1 / 1939121 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 3 / 3360307 | 0 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 1 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 1 / 81131 | 12 |  |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P366735
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.03 ± 0.55 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.89 ± 0.25 | |
| Basal Part of Pons | 7.89 ± 0.29 | |
| Cerebellar Cortex | 7.73 ± 0.43 | |
| Cerebellar Nuclei | 7.95 ± 0.25 | |
| Claustrum | 8.12 ± 0.4 | |
| Epithalamus | 7.38 ± 0.23 | |
| Frontal Lobe | 7.82 ± 0.42 | |
| Globus Pallidus | 8.11 ± 0.46 | |
| Hypothalamus | 7.83 ± 0.32 | |
| Insula | 7.73 ± 0.38 | |
| Limbic Lobe | 7.89 ± 0.46 | |
| Mesencephalon | 7.94 ± 0.51 | |
| Myelencephalon | 7.87 ± 0.42 | |
| Occipital Lobe | 7.84 ± 0.43 | |
| Parietal Lobe | 7.81 ± 0.43 | |
| Pontine Tegmentum | 7.71 ± 0.42 | |
| Striatum | 7.96 ± 0.43 | |
| Subthalamus | 7.8 ± 0.49 | |
| Temporal Lobe | 7.75 ± 0.46 | |
| Thalamus | 7.85 ± 0.36 | |
| White Matter | 8.1 ± 0.27 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Arid1b | CB | Cerebellum | 23.52 |  |
| 24.32 | | |||
| Arid1b | CTX | Cerebral cortex | 16.85 | |
| 10.45 | | |||
| Arid1b | HIP | Hippocampal region | 48.29 | |
| 42.83 | | |||
| Arid1b | HPF | Hippocampal formation | 37.12 | |
| 30.58 | | |||
| Arid1b | HY | Hypothalamus | 11.45 | |
| 6.73 | | |||
| Arid1b | LSX | Lateral septal complex | 13.63 | |
| 7.38 | | |||
| Arid1b | MB | Midbrain | 19.29 | |
| 12.47 | | |||
| Arid1b | MY | Medulla | 9.68 | |
| 7.46 | | |||
| Arid1b | OLF | Olfactory bulb | 38.56 | |
| 22.7 | | |||
| Arid1b | P | Pons | 12.66 | |
| 8.4 | | |||
| Arid1b | PAL | Pallidum | 8.56 | |
| 5.76 | | |||
| Arid1b | RHP | Retrohippocampal region | 17.01 | |
| 11.9 | | |||
| Arid1b | sAMY | Striatum-like amygdalar nuclei | 11.78 | |
| 7.46 | | |||
| Arid1b | STR | Striatum | 12.05 | |
| 7.07 | | |||
| Arid1b | STRd | Striatum dorsal region | 8.36 | |
| 5.12 | | |||
| Arid1b | STRv | Striatum ventral region | 23.17 | |
| 12.06 | | |||
| Arid1b | TH | Thalamus | 15.45 | |
| 9.94 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00066353 | 19 | 1124 | 1142 | ELATNLNVGTSSSAASSLK | Peptide Atlas |