Annotation Detail for COG6
Basic Information Top
| Gene Symbol: | COG6 ( COD2,DKFZp313D191,KIAA1134 ) |
|---|---|
| Gene Full Name: | component of oligomeric golgi complex 6 |
| Band: | 13q14.11 |
| Quick Links | Entrez ID:57511; OMIM: 606977; Uniprot ID:COG6_HUMAN; ENSEMBL ID: ENSG00000133103; HGNC ID: 18621 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.507805
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 25 / 564012 | 44 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 59 / 1939121 | 30 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 11 / 263845 | 41 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 130 / 3360307 | 38 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 66 / 1100989 | 59 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 2 / 89626 | 22 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 1 / 24145 | 41 | |
| liver | 7 / 207743 | 33 | |
| lung | 16 / 336974 | 47 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 6 / 67052 | 89 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 11 / 280825 | 39 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 34 / 330442 | 102 | |
| thymus | 6 / 81131 | 73 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 20 / 52413 | 381 |  |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 4 / 51780 | 77 | |
Microarray in - Probe name: A_24_P290692
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.93 ± 0.98 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.5 ± 0.19 | |
| Basal Part of Pons | 1.22 ± 0.32 | |
| Cerebellar Cortex | 1.32 ± 0.67 | |
| Cerebellar Nuclei | 1.77 ± 0.71 | |
| Claustrum | 2.37 ± 0.84 | |
| Epithalamus | 1.26 ± 0.72 | |
| Frontal Lobe | 1.33 ± 0.55 | |
| Globus Pallidus | 2.13 ± 0.33 | |
| Hypothalamus | 1.59 ± 0.7 | |
| Insula | 1.41 ± 0.47 | |
| Limbic Lobe | 1.51 ± 0.58 | |
| Mesencephalon | 1.65 ± 0.64 | |
| Myelencephalon | 1.52 ± 0.62 | |
| Occipital Lobe | 1.55 ± 0.56 | |
| Parietal Lobe | 1.49 ± 0.59 | |
| Pontine Tegmentum | 1.55 ± 0.65 | |
| Striatum | 1.66 ± 0.46 | |
| Subthalamus | 1.64 ± 0.6 | |
| Temporal Lobe | 1.44 ± 0.67 | |
| Thalamus | 1.47 ± 0.55 | |
| White Matter | 2.11 ± 0.39 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cog6 | CB | Cerebellum | 23.49 | |
| 40.71 | | |||
| Cog6 | CTX | Cerebral cortex | 37.38 | |
| 28.98 | | |||
| Cog6 | HIP | Hippocampal region | 22.53 | |
| 25.68 | | |||
| Cog6 | HPF | Hippocampal formation | 27.62 | |
| 27.33 | | |||
| Cog6 | HY | Hypothalamus | 4.96 | |
| 4.24 | | |||
| Cog6 | LSX | Lateral septal complex | 4.41 | |
| 3.15 | | |||
| Cog6 | MB | Midbrain | 15.13 | |
| 15.84 | | |||
| Cog6 | MY | Medulla | 27.42 | |
| 35.4 | | |||
| Cog6 | OLF | Olfactory bulb | 27.49 | |
| 22.01 | | |||
| Cog6 | P | Pons | 20.24 | |
| 25.02 | | |||
| Cog6 | PAL | Pallidum | 12.83 | |
| 13.4 | | |||
| Cog6 | RHP | Retrohippocampal region | 39.66 | |
| 32.32 | | |||
| Cog6 | sAMY | Striatum-like amygdalar nuclei | 16.15 | |
| 12.58 | | |||
| Cog6 | STR | Striatum | 10.34 | |
| 7.79 | | |||
| Cog6 | STRd | Striatum dorsal region | 10.04 | |
| 7.82 | | |||
| Cog6 | STRv | Striatum ventral region | 12.65 | |
| 8.41 | | |||
| Cog6 | TH | Thalamus | 25.11 | |
| 22.42 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00025814 | 27 | 365 | 391 | HVTTQGVEENIQEVVGHITEGVCRPLK | Peptide Atlas |