AutismKB 2.0

Annotation Detail for NYNRIN


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Basic Information Top
Gene Symbol:NYNRIN ( CGIN1,FLJ11811,KIAA1305 )
Gene Full Name: NYN domain and retroviral integrase containing
Band: 14q12
Quick LinksEntrez ID:57523; OMIM: NA; Uniprot ID:NYNRI_HUMAN; ENSEMBL ID: ENSG00000205978; HGNC ID: 20165
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst3 / 6231948
fetus20 / 56401235
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult38 / 193912119
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor5 / 11424643
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma1 / 1068839
head and neck tumor3 / 13630222
kidney tumor4 / 6895958
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal55 / 336030716
ovarian tumor8 / 76682104
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma3 / 4635664
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain7 / 11009896
cervix0 / 481710 
connective tissue3 / 14925520
ear1 / 1621261
embryonic tissue10 / 21572246
esophagus0 / 202090 
eye11 / 21105452
heart2 / 8962622
intestine5 / 23447221
kidney4 / 21177718
larynx3 / 24145124
liver3 / 20774314
lung7 / 33697420
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary10 / 10205197
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta11 / 28082539
prostate1 / 1893455
salivary gland0 / 201550 
skin1 / 2105744
spleen1 / 5395218
stomach0 / 966190 
testis1 / 3304423
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220911_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.15
Adipocyte4.45
AdrenalCortex5
Adrenalgland3.9
Amygdala4.7
Appendix4.8
AtrioventricularNode3.95
BDCA4+_DentriticCells4.6
Bonemarrow4.75
BronchialEpithelialCells5
CD105+_Endothelial4.5
CD14+_Monocytes4.75
CD19+_BCells(neg._sel.)4.7
CD33+_Myeloid5.8
CD34+5.85
CD4+_Tcells4.65
CD56+_NKCells5.1
CD71+_EarlyErythroid4.2
CD8+_Tcells4.15
CardiacMyocytes6.3
Caudatenucleus4.15
Cerebellum5.25
CerebellumPeduncles5.3
CiliaryGanglion3.4
CingulateCortex4.7
Colorectaladenocarcinoma4.55
DorsalRootGanglion4.75
FetalThyroid4.5
Fetalbrain5.05
Fetalliver5.95
Fetallung13.25
GlobusPallidus3.45
Heart5.9
Hypothalamus5.1
Kidney3.85
Leukemia_chronicMyelogenousK-5624.15
Leukemia_promyelocytic-HL-604.05
Leukemialymphoblastic(MOLT-4)3.55
Liver6.15
Lung5.15
Lymphnode3.85
Lymphoma_burkitts(Daudi)5.85
Lymphoma_burkitts(Raji)6.4
MedullaOblongata4.2
OccipitalLobe4.1
OlfactoryBulb3.65
Ovary3.25
Pancreas3.65
PancreaticIslet4.95
ParietalLobe4.9
Pituitary5.45
Placenta4.85
Pons4.4
PrefrontalCortex5.8
Prostate5.35
Salivarygland3.7
SkeletalMuscle5.55
Skin3.75
SmoothMuscle5.35
Spinalcord4.85
SubthalamicNucleus4.15
SuperiorCervicalGanglion5.65
TemporalLobe4.2
Testis4
TestisGermCell4.65
TestisIntersitial3.95
TestisLeydigCell4.6
TestisSeminiferousTubule3.9
Thalamus4.65
Thymus3.75
Thyroid5.85
Tongue4.65
Tonsil4.5
Trachea4.1
TrigeminalGanglion4.85
Uterus3.85
UterusCorpus4.15
WholeBlood4.9
Wholebrain3.75
colon4.65
pineal_day5.88
pineal_night5.48
retina6.675
small_intestine4.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P129005
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.51 ± 0.74
Basal Forebrain3.87 ± 0.52
Basal Part of Pons3.54 ± 0.58
Cerebellar Cortex4.4 ± 0.46
Cerebellar Nuclei4.42 ± 0.58
Claustrum3.36 ± 0.86
Epithalamus3.86 ± 0.42
Frontal Lobe3.52 ± 0.7
Globus Pallidus3.38 ± 0.84
Hypothalamus4.42 ± 0.65
Insula3.65 ± 0.68
Limbic Lobe3.48 ± 0.73
Mesencephalon3.71 ± 0.79
Myelencephalon3.71 ± 0.65
Occipital Lobe3.25 ± 0.74
Parietal Lobe3.54 ± 0.9
Pontine Tegmentum3.61 ± 0.76
Striatum3.24 ± 0.63
Subthalamus4.22 ± 0.22
Temporal Lobe3.54 ± 0.74
Thalamus3.33 ± 0.66
White Matter2.4 ± 0.32
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BC030046CBCerebellum12.33
14.37
BC030046CTXCerebral cortex14.01
10.1
BC030046HIPHippocampal region5.69
5.71
BC030046HPFHippocampal formation7.28
6.19
BC030046HYHypothalamus18
13.48
BC030046LSXLateral septal complex4.97
3
BC030046MBMidbrain13.19
11.22
BC030046MYMedulla19.76
19.49
BC030046OLFOlfactory bulb17.02
12.95
BC030046PPons12.34
11.15
BC030046PALPallidum13.11
11.1
BC030046RHPRetrohippocampal region10.62
7.29
BC030046sAMYStriatum-like amygdalar nuclei8.53
6.45
BC030046STRStriatum4.28
3.07
BC030046STRdStriatum dorsal region3.38
2.44
BC030046STRvStriatum ventral region5.34
3.82
BC030046THThalamus5.65
4.44
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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