Annotation Detail for CGN
Basic Information Top
| Gene Symbol: | CGN ( DKFZp779N1112,FLJ39281,KIAA1319 ) |
|---|---|
| Gene Full Name: | cingulin |
| Band: | 1q21.3 |
| Quick Links | Entrez ID:57530; OMIM: 609473; Uniprot ID:CING_HUMAN; ENSEMBL ID: ENSG00000143375; HGNC ID: 17429 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591464
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 23 / 564012 | 40 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 66 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 13 / 114246 | 113 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 95 / 3360307 | 28 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 11 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 23 / 234472 | 98 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 1 / 24145 | 41 | |
| liver | 1 / 207743 | 4 | |
| lung | 23 / 336974 | 68 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 15 / 214812 | 69 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 13 / 330442 | 39 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 6 / 52413 | 114 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P45728
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.2 ± 0.66 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.25 ± 0.31 | |
| Basal Part of Pons | 6.35 ± 0.23 | |
| Cerebellar Cortex | 6.41 ± 0.29 | |
| Cerebellar Nuclei | 6.88 ± 0.34 | |
| Claustrum | 5.26 ± 0.53 | |
| Epithalamus | 5.33 ± 0.8 | |
| Frontal Lobe | 5.53 ± 0.69 | |
| Globus Pallidus | 6.78 ± 0.85 | |
| Hypothalamus | 6 ± 0.5 | |
| Insula | 5.39 ± 0.43 | |
| Limbic Lobe | 5.53 ± 0.69 | |
| Mesencephalon | 6 ± 0.59 | |
| Myelencephalon | 5.8 ± 0.64 | |
| Occipital Lobe | 6.16 ± 0.54 | |
| Parietal Lobe | 5.75 ± 0.55 | |
| Pontine Tegmentum | 5.74 ± 0.58 | |
| Striatum | 5.67 ± 0.76 | |
| Subthalamus | 6.46 ± 0.26 | |
| Temporal Lobe | 5.61 ± 0.49 | |
| Thalamus | 5.82 ± 0.47 | |
| White Matter | 7.66 ± 0.41 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cgn | CB | Cerebellum | 0 | |
| 0 | | |||
| Cgn | CTX | Cerebral cortex | 0 | |
| 0 | | |||
| Cgn | HIP | Hippocampal region | 0 | |
| 0 | | |||
| Cgn | HPF | Hippocampal formation | 0 | |
| 0 | | |||
| Cgn | HY | Hypothalamus | 0 | |
| 0 | | |||
| Cgn | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| Cgn | MB | Midbrain | 0 | |
| 0 | | |||
| Cgn | MY | Medulla | 0 | |
| 0 | | |||
| Cgn | OLF | Olfactory bulb | 0 | |
| 0 | | |||
| Cgn | P | Pons | 0 | |
| 0 | | |||
| Cgn | PAL | Pallidum | 0 | |
| 0 | | |||
| Cgn | RHP | Retrohippocampal region | 0 | |
| 0 | | |||
| Cgn | sAMY | Striatum-like amygdalar nuclei | 0 | |
| 0 | | |||
| Cgn | STR | Striatum | 0 | |
| 0 | | |||
| Cgn | STRd | Striatum dorsal region | 0 | |
| 0 | | |||
| Cgn | STRv | Striatum ventral region | 0 | |
| 0 | | |||
| Cgn | TH | Thalamus | 0 | |
| 0 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00152155 | 18 | 135 | 152 | SHSQASLAGPGPVDPSNR | Peptide Atlas |