Annotation Detail for ZNF398
Basic Information Top
| Gene Symbol: | ZNF398 ( KIAA1339,P51,P71,ZER6 ) |
|---|---|
| Gene Full Name: | zinc finger protein 398 |
| Band: | 7q35 |
| Quick Links | Entrez ID:57541; OMIM: NA; Uniprot ID:ZN398_HUMAN; ENSEMBL ID: ENSG00000197024; HGNC ID: 18373 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.632032
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 4 / 62319 | 64 |  |
| fetus | 17 / 564012 | 30 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 48 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 16 / 263845 | 60 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 79 / 3360307 | 23 | |
| ovarian tumor | 6 / 76682 | 78 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 8 / 211054 | 37 | |
| heart | 4 / 89626 | 44 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 13 / 336974 | 38 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 3 / 20155 | 148 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 19 / 330442 | 57 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_6110_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.98 ± 0.6 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.44 ± 0.32 | |
| Basal Part of Pons | 3.39 ± 0.44 | |
| Cerebellar Cortex | 3.98 ± 0.25 | |
| Cerebellar Nuclei | 3.28 ± 0.56 | |
| Claustrum | 3.85 ± 0.64 | |
| Epithalamus | 3.24 ± 0.52 | |
| Frontal Lobe | 3.45 ± 0.57 | |
| Globus Pallidus | 2.99 ± 0.78 | |
| Hypothalamus | 3.34 ± 0.84 | |
| Insula | 3.41 ± 0.37 | |
| Limbic Lobe | 3.58 ± 0.71 | |
| Mesencephalon | 3.53 ± 0.64 | |
| Myelencephalon | 3.52 ± 0.63 | |
| Occipital Lobe | 3.88 ± 0.59 | |
| Parietal Lobe | 3.54 ± 0.63 | |
| Pontine Tegmentum | 3.53 ± 0.67 | |
| Striatum | 3.34 ± 0.56 | |
| Subthalamus | 3.19 ± 0.67 | |
| Temporal Lobe | 3.49 ± 0.62 | |
| Thalamus | 3.49 ± 0.54 | |
| White Matter | 4.39 ± 0.53 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Zfp398 | CB | Cerebellum | 42.34 | |
| 45.31 | | |||
| Zfp398 | CTX | Cerebral cortex | 58.28 | |
| 40.9 | | |||
| Zfp398 | HIP | Hippocampal region | 37.57 | |
| 50.43 | | |||
| Zfp398 | HPF | Hippocampal formation | 40.14 | |
| 42.4 | | |||
| Zfp398 | HY | Hypothalamus | 28.66 | |
| 21.85 | | |||
| Zfp398 | LSX | Lateral septal complex | 11.23 | |
| 8.64 | | |||
| Zfp398 | MB | Midbrain | 50.65 | |
| 43.51 | | |||
| Zfp398 | MY | Medulla | 59.32 | |
| 59.81 | | |||
| Zfp398 | OLF | Olfactory bulb | 57.72 | |
| 47.08 | | |||
| Zfp398 | P | Pons | 51.7 | |
| 48.66 | | |||
| Zfp398 | PAL | Pallidum | 31.6 | |
| 25.8 | | |||
| Zfp398 | RHP | Retrohippocampal region | 45.27 | |
| 32.61 | | |||
| Zfp398 | sAMY | Striatum-like amygdalar nuclei | 34.49 | |
| 23.38 | | |||
| Zfp398 | STR | Striatum | 25.24 | |
| 17.39 | | |||
| Zfp398 | STRd | Striatum dorsal region | 22.49 | |
| 16.03 | | |||
| Zfp398 | STRv | Striatum ventral region | 29.57 | |
| 18.23 | | |||
| Zfp398 | TH | Thalamus | 45.92 | |
| 39.15 | |