Annotation Detail for TXNDC16
Basic Information Top
| Gene Symbol: | TXNDC16 ( KIAA1344 ) |
|---|---|
| Gene Full Name: | thioredoxin domain containing 16 |
| Band: | 14q22.1 |
| Quick Links | Entrez ID:57544; OMIM: NA; Uniprot ID:TXD16_HUMAN; ENSEMBL ID: ENSG00000087301; HGNC ID: 19965 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.532609
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 15 / 564012 | 26 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 16 / 1939121 | 8 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 68 / 3360307 | 20 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 24 / 1100989 | 21 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 2 / 89626 | 22 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 |  |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 24 / 330442 | 72 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P398836
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.88 ± 0.49 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.58 ± 0.33 | |
| Basal Part of Pons | 5.23 ± 0.41 | |
| Cerebellar Cortex | 5.13 ± 0.27 | |
| Cerebellar Nuclei | 4.66 ± 0.66 | |
| Claustrum | 4.86 ± 0.85 | |
| Epithalamus | 4.65 ± 0.56 | |
| Frontal Lobe | 5.04 ± 0.43 | |
| Globus Pallidus | 4.1 ± 0.58 | |
| Hypothalamus | 4.91 ± 0.41 | |
| Insula | 5.04 ± 0.38 | |
| Limbic Lobe | 4.81 ± 0.51 | |
| Mesencephalon | 4.8 ± 0.64 | |
| Myelencephalon | 4.91 ± 0.56 | |
| Occipital Lobe | 4.95 ± 0.66 | |
| Parietal Lobe | 4.97 ± 0.53 | |
| Pontine Tegmentum | 4.93 ± 0.52 | |
| Striatum | 4.33 ± 0.66 | |
| Subthalamus | 4.97 ± 0.45 | |
| Temporal Lobe | 5.08 ± 0.4 | |
| Thalamus | 5.03 ± 0.62 | |
| White Matter | 5.23 ± 0.22 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 5730420B22Rik | CB | Cerebellum | 44.38 | |
| 51.77 | | |||
| 5730420B22Rik | CTX | Cerebral cortex | 100 | |
| 78.67 | | |||
| 5730420B22Rik | HIP | Hippocampal region | 61.43 | |
| 82.97 | | |||
| 5730420B22Rik | HPF | Hippocampal formation | 69.45 | |
| 78.37 | | |||
| 5730420B22Rik | HY | Hypothalamus | 48.45 | |
| 38.28 | | |||
| 5730420B22Rik | LSX | Lateral septal complex | 64.72 | |
| 48.24 | | |||
| 5730420B22Rik | MB | Midbrain | 59.82 | |
| 53.19 | | |||
| 5730420B22Rik | MY | Medulla | 64.92 | |
| 63.16 | | |||
| 5730420B22Rik | OLF | Olfactory bulb | 87.61 | |
| 78.63 | | |||
| 5730420B22Rik | P | Pons | 54.8 | |
| 50.7 | | |||
| 5730420B22Rik | PAL | Pallidum | 60.69 | |
| 54.99 | | |||
| 5730420B22Rik | RHP | Retrohippocampal region | 83.52 | |
| 72.64 | | |||
| 5730420B22Rik | sAMY | Striatum-like amygdalar nuclei | 58.13 | |
| 43.89 | | |||
| 5730420B22Rik | STR | Striatum | 86.45 | |
| 66.58 | | |||
| 5730420B22Rik | STRd | Striatum dorsal region | 89.31 | |
| 69.54 | | |||
| 5730420B22Rik | STRv | Striatum ventral region | 100 | |
| 75.13 | | |||
| 5730420B22Rik | TH | Thalamus | 51.39 | |
| 40.41 | |