AutismKB 2.0

Annotation Detail for SYT13


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Basic Information Top
Gene Symbol:SYT13 ( KIAA1427 )
Gene Full Name: synaptotagmin XIII
Band: 11p11.2
Quick LinksEntrez ID:57586; OMIM: 607716; Uniprot ID:SYT13_HUMAN; ENSEMBL ID: ENSG00000019505; HGNC ID: 14962
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus17 / 56401230
neonate0 / 310970 
infant2 / 2362084
juvenile0 / 555560 
adult37 / 193912119
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor9 / 11936975
germ cell tumor7 / 26384526
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor6 / 6895987
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal87 / 336030725
ovarian tumor0 / 766820 
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites5 / 40015124
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow1 / 4880120
brain49 / 110098944
cervix0 / 481710 
connective tissue0 / 1492550 
ear2 / 16212123
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye5 / 21105423
heart0 / 896260 
intestine4 / 23447217
kidney12 / 21177756
larynx0 / 241450 
liver1 / 2077434
lung8 / 33697423
lymph0 / 442700 
lymph node0 / 916100 
mammary gland2 / 15327113
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary2 / 10205119
pancreas15 / 21481269
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach4 / 9661941
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221859_at
Cell line Expression level Expression bar
721_B_lymphoblasts42.65
Adipocyte77.8
AdrenalCortex116.95
Adrenalgland81.05
Amygdala91.55
Appendix127.5
AtrioventricularNode98.25
BDCA4+_DentriticCells37.05
Bonemarrow134.25
BronchialEpithelialCells69.75
CD105+_Endothelial49.35
CD14+_Monocytes22.15
CD19+_BCells(neg._sel.)68.1
CD33+_Myeloid47.15
CD34+22.25
CD4+_Tcells57.1
CD56+_NKCells35.85
CD71+_EarlyErythroid57.85
CD8+_Tcells45.25
CardiacMyocytes100.95
Caudatenucleus73.15
Cerebellum101
CerebellumPeduncles108
CiliaryGanglion61.2
CingulateCortex88.5
Colorectaladenocarcinoma80.15
DorsalRootGanglion199.55
FetalThyroid79.4
Fetalbrain113.15
Fetalliver91.45
Fetallung63.35
GlobusPallidus61.8
Heart136.05
Hypothalamus92.4
Kidney95.85
Leukemia_chronicMyelogenousK-56272.75
Leukemia_promyelocytic-HL-6071.1
Leukemialymphoblastic(MOLT-4)66.2
Liver112.55
Lung90.4
Lymphnode76.65
Lymphoma_burkitts(Daudi)104.4
Lymphoma_burkitts(Raji)118.5
MedullaOblongata117.85
OccipitalLobe73.25
OlfactoryBulb69.4
Ovary80.55
Pancreas65.5
PancreaticIslet93.6
ParietalLobe106.25
Pituitary125.75
Placenta80.55
Pons83.3
PrefrontalCortex100.35
Prostate98.3
Salivarygland65.95
SkeletalMuscle107.65
Skin132.15
SmoothMuscle50.05
Spinalcord84.25
SubthalamicNucleus81.5
SuperiorCervicalGanglion260.05
TemporalLobe115.55
Testis77.6
TestisGermCell67
TestisIntersitial68.55
TestisLeydigCell81.1
TestisSeminiferousTubule67.3
Thalamus81.9
Thymus63.1
Thyroid96.7
Tongue141.3
Tonsil105
Trachea76.95
TrigeminalGanglion139.05
Uterus64.4
UterusCorpus89.4
WholeBlood87.85
Wholebrain68.1
colon84.35
pineal_day78.42
pineal_night70.64
retina93.05
small_intestine86.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_13389_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.53 ± 0.7
Basal Forebrain4.35 ± 0.69
Basal Part of Pons6.21 ± 0.28
Cerebellar Cortex5.45 ± 0.33
Cerebellar Nuclei4.97 ± 0.64
Claustrum5.7 ± 0.46
Epithalamus4.25 ± 0.84
Frontal Lobe5.36 ± 0.63
Globus Pallidus4.13 ± 0.76
Hypothalamus5.26 ± 0.45
Insula5.43 ± 0.34
Limbic Lobe5.47 ± 0.82
Mesencephalon5.08 ± 0.7
Myelencephalon5.16 ± 0.8
Occipital Lobe5.1 ± 0.75
Parietal Lobe5.43 ± 0.69
Pontine Tegmentum4.89 ± 0.8
Striatum3.32 ± 0.94
Subthalamus5.51 ± 0.55
Temporal Lobe5.5 ± 0.4
Thalamus5.36 ± 0.56
White Matter3.02 ± 0.79
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Syt13CBCerebellum92.79
81.52
Syt13CTXCerebral cortex100
100
Syt13HIPHippocampal region98.21
100
Syt13HPFHippocampal formation100
100
Syt13HYHypothalamus82.38
78.52
Syt13LSXLateral septal complex66.2
62.78
Syt13MBMidbrain83.99
83.8
Syt13MYMedulla79.62
87.78
Syt13OLFOlfactory bulb100
100
Syt13PPons79.95
83.69
Syt13PALPallidum77.57
81.03
Syt13RHPRetrohippocampal region100
100
Syt13sAMYStriatum-like amygdalar nuclei77.79
74.5
Syt13STRStriatum53.17
48.04
Syt13STRdStriatum dorsal region33.35
32.04
Syt13STRvStriatum ventral region67
58.52
Syt13THThalamus90.88
91.7
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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