Annotation Detail for PDZD4
Basic Information Top
| Gene Symbol: | PDZD4 ( FLJ34125,KIAA1444,LU1,PDZK4,PDZRN4L ) |
|---|---|
| Gene Full Name: | PDZ domain containing 4 |
| Band: | Xq28 |
| Quick Links | Entrez ID:57595; OMIM: 300634; Uniprot ID:PDZD4_HUMAN; ENSEMBL ID: ENSG00000067840; HGNC ID: 21167 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.92732
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 5 / 62319 | 80 |  |
| fetus | 38 / 564012 | 67 | |
| neonate | 0 / 31097 | 0 | |
| infant | 5 / 23620 | 211 |  |
| juvenile | 1 / 55556 | 17 | |
| adult | 49 / 1939121 | 25 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 140 / 3360307 | 41 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 114 / 1100989 | 103 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 12 / 211054 | 56 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_8461_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.28 ± 0.59 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.44 ± 0.15 | |
| Basal Part of Pons | 7.79 ± 0.29 | |
| Cerebellar Cortex | 7.18 ± 0.33 | |
| Cerebellar Nuclei | 6.69 ± 0.42 | |
| Claustrum | 8.49 ± 0.66 | |
| Epithalamus | 6.95 ± 0.33 | |
| Frontal Lobe | 7.23 ± 0.58 | |
| Globus Pallidus | 6.13 ± 0.5 | |
| Hypothalamus | 6.76 ± 0.5 | |
| Insula | 7.48 ± 0.61 | |
| Limbic Lobe | 7.93 ± 0.69 | |
| Mesencephalon | 7.15 ± 0.58 | |
| Myelencephalon | 7.47 ± 0.56 | |
| Occipital Lobe | 7.94 ± 0.73 | |
| Parietal Lobe | 7.59 ± 0.63 | |
| Pontine Tegmentum | 7.19 ± 0.62 | |
| Striatum | 8.16 ± 0.51 | |
| Subthalamus | 6.74 ± 0.6 | |
| Temporal Lobe | 7.55 ± 0.55 | |
| Thalamus | 6.99 ± 0.51 | |
| White Matter | 5.72 ± 0.61 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Pdzd4 | CB | Cerebellum | 25.45 | |
| 68.62 | | |||
| Pdzd4 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Pdzd4 | HIP | Hippocampal region | 95.77 | |
| 100 | | |||
| Pdzd4 | HPF | Hippocampal formation | 77.65 | |
| 100 | | |||
| Pdzd4 | HY | Hypothalamus | 100 | |
| 100 | | |||
| Pdzd4 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Pdzd4 | MB | Midbrain | 22.49 | |
| 27.31 | | |||
| Pdzd4 | MY | Medulla | 0.86 | |
| 1.69 | | |||
| Pdzd4 | OLF | Olfactory bulb | 80.28 | |
| 100 | | |||
| Pdzd4 | P | Pons | 5.88 | |
| 9.23 | | |||
| Pdzd4 | PAL | Pallidum | 97.37 | |
| 100 | | |||
| Pdzd4 | RHP | Retrohippocampal region | 48.12 | |
| 70.13 | | |||
| Pdzd4 | sAMY | Striatum-like amygdalar nuclei | 87.4 | |
| 97.22 | | |||
| Pdzd4 | STR | Striatum | 100 | |
| 100 | | |||
| Pdzd4 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Pdzd4 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Pdzd4 | TH | Thalamus | 86.58 | |
| 91.01 | |