AutismKB 2.0

Annotation Detail for RANBP10


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Basic Information Top
Gene Symbol:RANBP10 ( FLJ31165,KIAA1464 )
Gene Full Name: RAN binding protein 10
Band: 16q22
Quick LinksEntrez ID:57610; OMIM: NA; Uniprot ID:RBP10_HUMAN; ENSEMBL ID: ENSG00000141084; HGNC ID: 29285
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus35 / 56401262
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult66 / 193912134
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor7 / 11424661
esophageal tumor1 / 1729057
gastrointestinal tumor8 / 11936967
germ cell tumor6 / 26384522
glioma1 / 1068839
head and neck tumor8 / 13630258
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor4 / 10312738
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal140 / 336030741
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor7 / 12494956
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites4 / 4001599
bladder1 / 2975733
blood0 / 1234780 
bone1 / 7165513
bone marrow1 / 4880120
brain31 / 110098928
cervix2 / 4817141
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue8 / 21572237
esophagus1 / 2020949
eye8 / 21105437
heart1 / 8962611
intestine10 / 23447242
kidney5 / 21177723
larynx0 / 241450 
liver5 / 20774324
lung21 / 33697462
lymph0 / 442700 
lymph node0 / 916100 
mammary gland5 / 15327132
mouth2 / 6705229
muscle3 / 10771527
nerve2 / 15768126
ovary2 / 10205119
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta15 / 28082553
prostate4 / 18934521
salivary gland0 / 201550 
skin8 / 21057437
spleen2 / 5395237
stomach4 / 9661941
testis8 / 33044224
thymus5 / 8113161
thyroid7 / 47473147
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus9 / 23287838
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 53987_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.6
Adipocyte8
AdrenalCortex11.15
Adrenalgland8.6
Amygdala8.55
Appendix10.8
AtrioventricularNode7.95
BDCA4+_DentriticCells9.6
Bonemarrow12.2
BronchialEpithelialCells7.9
CD105+_Endothelial63.75
CD14+_Monocytes9.6
CD19+_BCells(neg._sel.)15
CD33+_Myeloid11.3
CD34+13.25
CD4+_Tcells14.5
CD56+_NKCells10.5
CD71+_EarlyErythroid303.1
CD8+_Tcells9
CardiacMyocytes11.1
Caudatenucleus7.8
Cerebellum7.15
CerebellumPeduncles11.15
CiliaryGanglion6.8
CingulateCortex9
Colorectaladenocarcinoma8.65
DorsalRootGanglion7.2
FetalThyroid8.7
Fetalbrain8.65
Fetalliver7.55
Fetallung8.05
GlobusPallidus6.35
Heart13.5
Hypothalamus9.45
Kidney7.65
Leukemia_chronicMyelogenousK-5627.85
Leukemia_promyelocytic-HL-607.5
Leukemialymphoblastic(MOLT-4)7.05
Liver11.55
Lung9.55
Lymphnode7.7
Lymphoma_burkitts(Daudi)11.25
Lymphoma_burkitts(Raji)12.1
MedullaOblongata7.85
OccipitalLobe7.85
OlfactoryBulb6.8
Ovary6.65
Pancreas7.05
PancreaticIslet9.25
ParietalLobe9.4
Pituitary9.9
Placenta8.9
Pons8.35
PrefrontalCortex11.2
Prostate10.2
Salivarygland7.05
SkeletalMuscle11.35
Skin7.3
SmoothMuscle9.8
Spinalcord8.9
SubthalamicNucleus9.15
SuperiorCervicalGanglion15.25
TemporalLobe8.1
Testis7.4
TestisGermCell7.45
TestisIntersitial7.9
TestisLeydigCell8.95
TestisSeminiferousTubule7.55
Thalamus8.8
Thymus7.15
Thyroid10.15
Tongue8.8
Tonsil8.75
Trachea7.2
TrigeminalGanglion10.85
Uterus7.2
UterusCorpus8.45
WholeBlood9.55
Wholebrain6.55
colon8.1
pineal_day11.06
pineal_night11.62
retina10.675
small_intestine7.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6068_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.46 ± 0.7
Basal Forebrain4.12 ± 0.3
Basal Part of Pons4 ± 0.52
Cerebellar Cortex4.42 ± 0.44
Cerebellar Nuclei3.94 ± 0.46
Claustrum4.72 ± 0.93
Epithalamus4.23 ± 0.34
Frontal Lobe3.94 ± 0.61
Globus Pallidus4.31 ± 0.58
Hypothalamus3.75 ± 0.58
Insula4.17 ± 0.5
Limbic Lobe4.48 ± 0.55
Mesencephalon4.28 ± 0.66
Myelencephalon4.19 ± 0.62
Occipital Lobe4.44 ± 0.62
Parietal Lobe4.21 ± 0.62
Pontine Tegmentum4.17 ± 0.52
Striatum4.39 ± 0.61
Subthalamus3.47 ± 0.05
Temporal Lobe4.11 ± 0.56
Thalamus4.01 ± 0.5
White Matter4.83 ± 0.77
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ranbp10CBCerebellum64.09
100
Ranbp10CTXCerebral cortex100
84.61
Ranbp10HIPHippocampal region67.99
100
Ranbp10HPFHippocampal formation84.57
100
Ranbp10HYHypothalamus84.9
71.19
Ranbp10LSXLateral septal complex78.96
59.27
Ranbp10MBMidbrain67.77
65.34
Ranbp10MYMedulla79.26
93.76
Ranbp10OLFOlfactory bulb100
94.25
Ranbp10PPons72.01
79.06
Ranbp10PALPallidum70.58
65.22
Ranbp10RHPRetrohippocampal region100
100
Ranbp10sAMYStriatum-like amygdalar nuclei98.56
78.14
Ranbp10STRStriatum74.51
56.03
Ranbp10STRdStriatum dorsal region71.74
54.58
Ranbp10STRvStriatum ventral region70.87
49.56
Ranbp10THThalamus91.01
84.47
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00515644 26 372 397 HGPSSSHMHNTGADSPSCSNGVASTK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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