Annotation Detail for TSHZ3
Basic Information Top
| Gene Symbol: | TSHZ3 ( FLJ54422,KIAA1474,TSH3,ZNF537 ) |
|---|---|
| Gene Full Name: | teashirt zinc finger homeobox 3 |
| Band: | 19q12 |
| Quick Links | Entrez ID:57616; OMIM: NA; Uniprot ID:TSH3_HUMAN; ENSEMBL ID: ENSG00000121297; HGNC ID: 30700 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.278436
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 40 / 564012 | 70 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 37 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 87 / 3360307 | 25 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 33 / 1100989 | 29 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 15 / 232878 | 64 | |
| vascular | 10 / 51780 | 193 | |
Microarray in - Probe name: A_23_P361014
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.3 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.26 ± 0.3 | |
| Basal Part of Pons | 7.88 ± 0.63 | |
| Cerebellar Cortex | 6.88 ± 0.3 | |
| Cerebellar Nuclei | 7.06 ± 0.44 | |
| Claustrum | 7.11 ± 0.64 | |
| Epithalamus | 7.13 ± 0.61 | |
| Frontal Lobe | 7.3 ± 0.68 | |
| Globus Pallidus | 6.22 ± 0.81 | |
| Hypothalamus | 7.38 ± 0.49 | |
| Insula | 7.73 ± 0.3 | |
| Limbic Lobe | 7.39 ± 0.79 | |
| Mesencephalon | 7.05 ± 0.6 | |
| Myelencephalon | 7.52 ± 0.67 | |
| Occipital Lobe | 8.15 ± 0.38 | |
| Parietal Lobe | 7.68 ± 0.53 | |
| Pontine Tegmentum | 7.39 ± 0.6 | |
| Striatum | 6.58 ± 1.06 | |
| Subthalamus | 7.42 ± 0.46 | |
| Temporal Lobe | 7.86 ± 0.36 | |
| Thalamus | 7.59 ± 0.69 | |
| White Matter | 5.85 ± 0.74 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tshz3 | CB | Cerebellum | 0.97 | |
| 1.48 | | |||
| Tshz3 | CTX | Cerebral cortex | 26.02 | |
| 18.87 | | |||
| Tshz3 | HIP | Hippocampal region | 2.8 | |
| 2.83 | | |||
| Tshz3 | HPF | Hippocampal formation | 10.13 | |
| 9.15 | | |||
| Tshz3 | HY | Hypothalamus | 0.42 | |
| 0.39 | | |||
| Tshz3 | LSX | Lateral septal complex | 0.55 | |
| 0.6 | | |||
| Tshz3 | MB | Midbrain | 2.29 | |
| 2.6 | | |||
| Tshz3 | MY | Medulla | 4.8 | |
| 4.58 | | |||
| Tshz3 | OLF | Olfactory bulb | 8.31 | |
| 7.72 | | |||
| Tshz3 | P | Pons | 2 | |
| 2.03 | | |||
| Tshz3 | PAL | Pallidum | 3.73 | |
| 3.45 | | |||
| Tshz3 | RHP | Retrohippocampal region | 21.08 | |
| 16.88 | | |||
| Tshz3 | sAMY | Striatum-like amygdalar nuclei | 0.73 | |
| 0.65 | | |||
| Tshz3 | STR | Striatum | 2.97 | |
| 2.83 | | |||
| Tshz3 | STRd | Striatum dorsal region | 3.41 | |
| 3.4 | | |||
| Tshz3 | STRv | Striatum ventral region | 3.74 | |
| 3.05 | | |||
| Tshz3 | TH | Thalamus | 1.26 | |
| 1.41 | |