Annotation Detail for LRFN1
Basic Information Top
| Gene Symbol: | LRFN1 ( KIAA1484,SALM2 ) |
|---|---|
| Gene Full Name: | leucine rich repeat and fibronectin type III domain containing 1 |
| Band: | 19q13.2 |
| Quick Links | Entrez ID:57622; OMIM: 612807; Uniprot ID:LRFN1_HUMAN; ENSEMBL ID: ENSG00000128011; HGNC ID: 29290 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.97860
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 1 / 564012 | 1 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 8 / 1939121 | 4 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 6 / 3360307 | 1 | |
| ovarian tumor | 5 / 76682 | 65 |  |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 3 / 102680 | 29 |  |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 4 / 1100989 | 3 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P40775
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.75 ± 0.78 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.68 ± 0.34 | |
| Basal Part of Pons | 8.26 ± 0.57 | |
| Cerebellar Cortex | 7.96 ± 0.35 | |
| Cerebellar Nuclei | 8.5 ± 0.45 | |
| Claustrum | 9.4 ± 0.8 | |
| Epithalamus | 7.52 ± 0.41 | |
| Frontal Lobe | 8.19 ± 0.58 | |
| Globus Pallidus | 9.62 ± 0.57 | |
| Hypothalamus | 8 ± 0.61 | |
| Insula | 8.16 ± 0.58 | |
| Limbic Lobe | 8.52 ± 0.68 | |
| Mesencephalon | 8.45 ± 0.69 | |
| Myelencephalon | 8.45 ± 0.75 | |
| Occipital Lobe | 8.35 ± 0.66 | |
| Parietal Lobe | 8.46 ± 0.8 | |
| Pontine Tegmentum | 8.38 ± 0.64 | |
| Striatum | 8.57 ± 0.75 | |
| Subthalamus | 8.27 ± 0.6 | |
| Temporal Lobe | 8.3 ± 0.7 | |
| Thalamus | 8.32 ± 0.59 | |
| White Matter | 8.88 ± 0.47 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lrfn1 | CB | Cerebellum | 3.83 | |
| 5.89 | | |||
| Lrfn1 | CTX | Cerebral cortex | 55.74 | |
| 49.18 | | |||
| Lrfn1 | HIP | Hippocampal region | 21.95 | |
| 33.67 | | |||
| Lrfn1 | HPF | Hippocampal formation | 23.68 | |
| 30.64 | | |||
| Lrfn1 | HY | Hypothalamus | 4.96 | |
| 4.5 | | |||
| Lrfn1 | LSX | Lateral septal complex | 10.19 | |
| 7.62 | | |||
| Lrfn1 | MB | Midbrain | 6.83 | |
| 8.74 | | |||
| Lrfn1 | MY | Medulla | 1 | |
| 1.3 | | |||
| Lrfn1 | OLF | Olfactory bulb | 18.36 | |
| 17.46 | | |||
| Lrfn1 | P | Pons | 3.52 | |
| 5.82 | | |||
| Lrfn1 | PAL | Pallidum | 10.93 | |
| 10.93 | | |||
| Lrfn1 | RHP | Retrohippocampal region | 27.8 | |
| 28.21 | | |||
| Lrfn1 | sAMY | Striatum-like amygdalar nuclei | 11.18 | |
| 9.42 | | |||
| Lrfn1 | STR | Striatum | 6.36 | |
| 5.59 | | |||
| Lrfn1 | STRd | Striatum dorsal region | 4.36 | |
| 4.06 | | |||
| Lrfn1 | STRv | Striatum ventral region | 8.65 | |
| 7.24 | | |||
| Lrfn1 | TH | Thalamus | 21.62 | |
| 21.01 | |