Annotation Detail for PHF12
Basic Information Top
| Gene Symbol: | PHF12 ( FLJ34122,KIAA1523,MGC131914,PF1 ) |
|---|---|
| Gene Full Name: | PHD finger protein 12 |
| Band: | 17q11.2 |
| Quick Links | Entrez ID:57649; OMIM: NA; Uniprot ID:PHF12_HUMAN; ENSEMBL ID: ENSG00000109118; HGNC ID: 20816 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.444173
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 72 / 1939121 | 37 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 75 / 3360307 | 22 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 13 / 102680 | 126 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 37 / 1100989 | 33 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 10 / 215722 | 46 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 2 / 24145 | 82 | |
| liver | 1 / 207743 | 4 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 16 / 189345 | 84 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 10 / 330442 | 30 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P305761
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.95 ± 1 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.48 ± 0.18 | |
| Basal Part of Pons | 1.22 ± 0.4 | |
| Cerebellar Cortex | 1.48 ± 0.75 | |
| Cerebellar Nuclei | 1.76 ± 0.71 | |
| Claustrum | 2.36 ± 0.84 | |
| Epithalamus | 1.24 ± 0.71 | |
| Frontal Lobe | 1.36 ± 0.61 | |
| Globus Pallidus | 1.98 ± 0.31 | |
| Hypothalamus | 1.62 ± 0.7 | |
| Insula | 1.46 ± 0.58 | |
| Limbic Lobe | 1.49 ± 0.59 | |
| Mesencephalon | 1.65 ± 0.68 | |
| Myelencephalon | 1.51 ± 0.64 | |
| Occipital Lobe | 1.55 ± 0.56 | |
| Parietal Lobe | 1.47 ± 0.61 | |
| Pontine Tegmentum | 1.57 ± 0.63 | |
| Striatum | 1.63 ± 0.48 | |
| Subthalamus | 1.62 ± 0.6 | |
| Temporal Lobe | 1.39 ± 0.62 | |
| Thalamus | 1.47 ± 0.55 | |
| White Matter | 2.03 ± 0.46 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Phf12 | CB | Cerebellum | 36.31 | |
| 45.32 | | |||
| Phf12 | CTX | Cerebral cortex | 100 | |
| 81.87 | | |||
| Phf12 | HIP | Hippocampal region | 54.51 | |
| 74.08 | | |||
| Phf12 | HPF | Hippocampal formation | 61.92 | |
| 66.91 | | |||
| Phf12 | HY | Hypothalamus | 74.95 | |
| 63.23 | | |||
| Phf12 | LSX | Lateral septal complex | 64.93 | |
| 44.92 | | |||
| Phf12 | MB | Midbrain | 64.95 | |
| 58.36 | | |||
| Phf12 | MY | Medulla | 63.18 | |
| 64.8 | | |||
| Phf12 | OLF | Olfactory bulb | 88.5 | |
| 84.37 | | |||
| Phf12 | P | Pons | 66.84 | |
| 70.93 | | |||
| Phf12 | PAL | Pallidum | 76.89 | |
| 70.37 | | |||
| Phf12 | RHP | Retrohippocampal region | 76.35 | |
| 58.42 | | |||
| Phf12 | sAMY | Striatum-like amygdalar nuclei | 91.47 | |
| 70.89 | | |||
| Phf12 | STR | Striatum | 91.71 | |
| 69.58 | | |||
| Phf12 | STRd | Striatum dorsal region | 91.81 | |
| 69.8 | | |||
| Phf12 | STRv | Striatum ventral region | 100 | |
| 77.17 | | |||
| Phf12 | TH | Thalamus | 80.31 | |
| 68.86 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00028693 | 15 | 313 | 327 | WMCPNHIEHVVLNQK | Peptide Atlas |
| PHF12_HUMAN_129 | 13 | 129 | 141 | TTSPSSDTDLLDR | PRIDE |
| PHF12_HUMAN_900 | 21 | 900 | 920 | QDEEPSEEAAMMSSQAQGPQR | PRIDE |