Annotation Detail for PHRF1
Basic Information Top
| Gene Symbol: | PHRF1 ( KIAA1542,RNF221 ) |
|---|---|
| Gene Full Name: | PHD and ring finger domains 1 |
| Band: | 11p15.5 |
| Quick Links | Entrez ID:57661; OMIM: 611780; Uniprot ID:PHRF1_HUMAN; ENSEMBL ID: ENSG00000070047; HGNC ID: 24351 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.325838
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 10 / 70761 | 141 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 14 / 564012 | 24 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 44 / 1939121 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 16 / 103127 | 155 | |
| lymphoma | 21 / 71755 | 292 |  |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 83 / 3360307 | 24 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 21 / 104616 | 200 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 9 / 124949 | 72 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 6 / 123478 | 48 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 |  |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 19 / 215722 | 88 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 10 / 211054 | 47 | |
| heart | 0 / 89626 | 0 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 18 / 336974 | 53 | |
| lymph | 20 / 44270 | 451 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 25 / 214812 | 116 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 10 / 280825 | 35 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 3 / 20155 | 148 | |
| skin | 11 / 210574 | 52 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P75391
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.16 ± 0.51 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.19 ± 0.32 | |
| Basal Part of Pons | 5.47 ± 0.33 | |
| Cerebellar Cortex | 5.72 ± 0.36 | |
| Cerebellar Nuclei | 5.03 ± 0.41 | |
| Claustrum | 4.97 ± 0.81 | |
| Epithalamus | 5.06 ± 0.69 | |
| Frontal Lobe | 5.31 ± 0.46 | |
| Globus Pallidus | 4.96 ± 0.22 | |
| Hypothalamus | 4.91 ± 0.38 | |
| Insula | 5.37 ± 0.57 | |
| Limbic Lobe | 5.36 ± 0.48 | |
| Mesencephalon | 5.15 ± 0.48 | |
| Myelencephalon | 5.31 ± 0.45 | |
| Occipital Lobe | 5.38 ± 0.43 | |
| Parietal Lobe | 5.26 ± 0.38 | |
| Pontine Tegmentum | 5.26 ± 0.47 | |
| Striatum | 5.03 ± 0.33 | |
| Subthalamus | 5.23 ± 0.62 | |
| Temporal Lobe | 5.47 ± 0.38 | |
| Thalamus | 5.39 ± 0.31 | |
| White Matter | 5.56 ± 0.39 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AA673488 | CB | Cerebellum | 21.16 | |
| 23.33 | | |||
| AA673488 | CTX | Cerebral cortex | 38.65 | |
| 28.11 | | |||
| AA673488 | HIP | Hippocampal region | 29.94 | |
| 34.83 | | |||
| AA673488 | HPF | Hippocampal formation | 30.98 | |
| 30.73 | | |||
| AA673488 | HY | Hypothalamus | 10.87 | |
| 8.09 | | |||
| AA673488 | LSX | Lateral septal complex | 12.36 | |
| 9.01 | | |||
| AA673488 | MB | Midbrain | 11.24 | |
| 9.2 | | |||
| AA673488 | MY | Medulla | 22.31 | |
| 20.93 | | |||
| AA673488 | OLF | Olfactory bulb | 39.83 | |
| 32.73 | | |||
| AA673488 | P | Pons | 11.99 | |
| 11 | | |||
| AA673488 | PAL | Pallidum | 12.7 | |
| 10.55 | | |||
| AA673488 | RHP | Retrohippocampal region | 34.26 | |
| 25.31 | | |||
| AA673488 | sAMY | Striatum-like amygdalar nuclei | 23.65 | |
| 16.95 | | |||
| AA673488 | STR | Striatum | 16.07 | |
| 11.41 | | |||
| AA673488 | STRd | Striatum dorsal region | 15.73 | |
| 11.39 | | |||
| AA673488 | STRv | Striatum ventral region | 15.44 | |
| 10.11 | | |||
| AA673488 | TH | Thalamus | 19.68 | |
| 15.57 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00080815 | 18 | 1377 | 1394 | VQEAARPEEVVSQTPLLR | Peptide Atlas |