Annotation Detail for RNF213
Basic Information Top
| Gene Symbol: | RNF213 ( C17orf27,DKFZp762N1115,FLJ13051,KIAA1554,KIAA1618,MGC46622,MGC9929,NET57 ) |
|---|---|
| Gene Full Name: | ring finger protein 213 |
| Band: | 17q25.3 |
| Quick Links | Entrez ID:57674; OMIM: NA; Uniprot ID:ALO17_HUMAN; ENSEMBL ID: ENSG00000173821,ENSG00000180843; HGNC ID: 14539 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.195642
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 7 / 62319 | 112 |  |
| fetus | 42 / 564012 | 74 | |
| neonate | 3 / 31097 | 96 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 650 / 1939121 | 335 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 26 / 94178 | 276 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 18 / 82823 | 217 | |
| colorectal tumor | 37 / 114246 | 323 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 101 / 119369 | 846 | |
| germ cell tumor | 26 / 263845 | 98 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 19 / 136302 | 139 | |
| kidney tumor | 27 / 68959 | 391 | |
| leukemia | 30 / 95842 | 313 | |
| liver tumor | 7 / 96359 | 72 | |
| lung tumor | 34 / 103127 | 329 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 13 / 97250 | 133 | |
| normal | 381 / 3360307 | 113 | |
| ovarian tumor | 9 / 76682 | 117 | |
| pancreatic tumor | 8 / 104616 | 76 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 |  |
| prostate cancer | 17 / 102680 | 165 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 8 / 124949 | 64 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 143 / 90257 | 1584 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 0 / 29757 | 0 | |
| blood | 39 / 123478 | 315 | |
| bone | 16 / 71655 | 223 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 56 / 1100989 | 50 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 13 / 149255 | 87 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 15 / 215722 | 69 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 23 / 211054 | 108 | |
| heart | 6 / 89626 | 66 | |
| intestine | 62 / 234472 | 264 | |
| kidney | 40 / 211777 | 188 | |
| larynx | 8 / 24145 | 331 | |
| liver | 19 / 207743 | 91 | |
| lung | 69 / 336974 | 204 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 70 / 153271 | 456 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 10 / 102051 | 97 | |
| pancreas | 20 / 214812 | 93 | |
| parathyroid | 7 / 20539 | 340 | |
| pharynx | 9 / 41328 | 217 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 22 / 280825 | 78 | |
| prostate | 31 / 189345 | 163 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 15 / 210574 | 71 | |
| spleen | 17 / 53952 | 315 | |
| stomach | 106 / 96619 | 1097 | |
| testis | 3 / 330442 | 9 | |
| thymus | 12 / 81131 | 147 | |
| thyroid | 11 / 47473 | 231 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 165 / 232878 | 708 | |
| vascular | 1 / 51780 | 19 | |
- Probe name: A_24_P923884
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.06 ± 0.47 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.51 ± 0.35 | |
| Basal Part of Pons | 7 ± 0.44 | |
| Cerebellar Cortex | 6.74 ± 0.28 | |
| Cerebellar Nuclei | 7.75 ± 0.5 | |
| Claustrum | 7.54 ± 0.49 | |
| Epithalamus | 7.52 ± 0.27 | |
| Frontal Lobe | 6.96 ± 0.54 | |
| Globus Pallidus | 8.65 ± 0.27 | |
| Hypothalamus | 7.21 ± 0.55 | |
| Insula | 6.84 ± 0.32 | |
| Limbic Lobe | 6.89 ± 0.63 | |
| Mesencephalon | 7.37 ± 0.49 | |
| Myelencephalon | 7.27 ± 0.53 | |
| Occipital Lobe | 7.52 ± 0.52 | |
| Parietal Lobe | 7.18 ± 0.53 | |
| Pontine Tegmentum | 7.21 ± 0.46 | |
| Striatum | 7.49 ± 0.63 | |
| Subthalamus | 7.3 ± 0.3 | |
| Temporal Lobe | 6.93 ± 0.41 | |
| Thalamus | 7.52 ± 0.3 | |
| White Matter | 9.04 ± 0.53 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00034137 | 21 | 404 | 424 | GGEEFGESKWDSNICELHYTR | Peptide Atlas |