Annotation Detail for CACHD1
Basic Information Top
| Gene Symbol: | CACHD1 ( KIAA1573,RP4-655E10.1 ) |
|---|---|
| Gene Full Name: | cache domain containing 1 |
| Band: | 1p31.3 |
| Quick Links | Entrez ID:57685; OMIM: NA; Uniprot ID:CAHD1_HUMAN; ENSEMBL ID: ENSG00000158966; HGNC ID: 29314 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.443891
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 16 / 564012 | 28 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 45 / 1939121 | 23 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 19 / 263845 | 72 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 75 / 3360307 | 22 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 9 / 104616 | 86 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 1 / 89626 | 11 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 7 / 67052 | 104 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 20 / 330442 | 60 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_5345_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.95 ± 0.9 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.38 ± 0.47 | |
| Basal Part of Pons | 2.06 ± 0.81 | |
| Cerebellar Cortex | 2.13 ± 0.74 | |
| Cerebellar Nuclei | 2.27 ± 0.65 | |
| Claustrum | 3.21 ± 0.82 | |
| Epithalamus | 2.75 ± 0.49 | |
| Frontal Lobe | 2.25 ± 0.76 | |
| Globus Pallidus | 3 ± 0.39 | |
| Hypothalamus | 2.47 ± 0.54 | |
| Insula | 2.11 ± 0.82 | |
| Limbic Lobe | 2.46 ± 0.82 | |
| Mesencephalon | 2.6 ± 0.75 | |
| Myelencephalon | 2.45 ± 0.74 | |
| Occipital Lobe | 2.3 ± 0.85 | |
| Parietal Lobe | 2.44 ± 0.93 | |
| Pontine Tegmentum | 2.42 ± 0.8 | |
| Striatum | 2.85 ± 0.84 | |
| Subthalamus | 2.27 ± 0.91 | |
| Temporal Lobe | 2.36 ± 0.86 | |
| Thalamus | 2.48 ± 0.7 | |
| White Matter | 2.71 ± 0.56 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cachd1 | CB | Cerebellum | 6.79 | |
| 9.46 | | |||
| Cachd1 | CTX | Cerebral cortex | 3.38 | |
| 2.92 | | |||
| Cachd1 | HIP | Hippocampal region | 15.54 | |
| 29.03 | | |||
| Cachd1 | HPF | Hippocampal formation | 12.01 | |
| 18.05 | | |||
| Cachd1 | HY | Hypothalamus | 10.52 | |
| 9.46 | | |||
| Cachd1 | LSX | Lateral septal complex | 13.38 | |
| 9.87 | | |||
| Cachd1 | MB | Midbrain | 28.83 | |
| 27.94 | | |||
| Cachd1 | MY | Medulla | 12.86 | |
| 13.96 | | |||
| Cachd1 | OLF | Olfactory bulb | 9.55 | |
| 7.51 | | |||
| Cachd1 | P | Pons | 12.71 | |
| 13.55 | | |||
| Cachd1 | PAL | Pallidum | 8.22 | |
| 7.7 | | |||
| Cachd1 | RHP | Retrohippocampal region | 6.91 | |
| 5.2 | | |||
| Cachd1 | sAMY | Striatum-like amygdalar nuclei | 12.71 | |
| 9.9 | | |||
| Cachd1 | STR | Striatum | 4.31 | |
| 3.18 | | |||
| Cachd1 | STRd | Striatum dorsal region | 1.08 | |
| 0.93 | | |||
| Cachd1 | STRv | Striatum ventral region | 7.01 | |
| 4.43 | | |||
| Cachd1 | TH | Thalamus | 27.11 | |
| 24.71 | |