Annotation Detail for VAT1L
Basic Information Top
| Gene Symbol: | VAT1L ( KIAA1576 ) |
|---|---|
| Gene Full Name: | vesicle amine transport protein 1 homolog (T. californica)-like |
| Band: | 16q23.1 |
| Quick Links | Entrez ID:57687; OMIM: NA; Uniprot ID:VAT1L_HUMAN; ENSEMBL ID: ENSG00000171724; HGNC ID: 29315 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.461405
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 11 / 62319 | 176 |  |
| fetus | 7 / 564012 | 12 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 9 / 55556 | 161 | |
| adult | 36 / 1939121 | 18 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 17 / 263845 | 64 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 110 / 3360307 | 32 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 46 / 1100989 | 41 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 18 / 215722 | 83 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 19 / 211054 | 90 | |
| heart | 1 / 89626 | 11 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 9 / 15768 | 570 |  |
| ovary | 5 / 102051 | 48 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 3 / 20155 | 148 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_8565_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.59 ± 0.67 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.09 ± 0.35 | |
| Basal Part of Pons | 5.14 ± 0.35 | |
| Cerebellar Cortex | 6.23 ± 0.38 | |
| Cerebellar Nuclei | 5.88 ± 0.63 | |
| Claustrum | 5.64 ± 0.57 | |
| Epithalamus | 5.81 ± 0.91 | |
| Frontal Lobe | 5.85 ± 0.83 | |
| Globus Pallidus | 6.18 ± 0.88 | |
| Hypothalamus | 7.41 ± 0.35 | |
| Insula | 5.78 ± 0.42 | |
| Limbic Lobe | 5.58 ± 0.99 | |
| Mesencephalon | 6.11 ± 1.26 | |
| Myelencephalon | 5.92 ± 0.88 | |
| Occipital Lobe | 5.04 ± 0.73 | |
| Parietal Lobe | 5.33 ± 0.92 | |
| Pontine Tegmentum | 6.26 ± 0.82 | |
| Striatum | 7.65 ± 1.12 | |
| Subthalamus | 6.37 ± 0.6 | |
| Temporal Lobe | 5.49 ± 0.69 | |
| Thalamus | 5.53 ± 0.87 | |
| White Matter | 4.36 ± 0.48 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AI427515 | CB | Cerebellum | 20.39 | |
| 20.65 | | |||
| AI427515 | CTX | Cerebral cortex | 25.6 | |
| 16.24 | | |||
| AI427515 | HIP | Hippocampal region | 5.02 | |
| 4.68 | | |||
| AI427515 | HPF | Hippocampal formation | 14.19 | |
| 10.47 | | |||
| AI427515 | HY | Hypothalamus | 50 | |
| 50 | | |||
| AI427515 | LSX | Lateral septal complex | 50 | |
| 50 | | |||
| AI427515 | MB | Midbrain | 44.8 | |
| 37.52 | | |||
| AI427515 | MY | Medulla | 42.8 | |
| 49.01 | | |||
| AI427515 | OLF | Olfactory bulb | 29.64 | |
| 19.85 | | |||
| AI427515 | P | Pons | 42.12 | |
| 40.02 | | |||
| AI427515 | PAL | Pallidum | 50 | |
| 48.18 | | |||
| AI427515 | RHP | Retrohippocampal region | 25.03 | |
| 15.78 | | |||
| AI427515 | sAMY | Striatum-like amygdalar nuclei | 50 | |
| 50 | | |||
| AI427515 | STR | Striatum | 50 | |
| 41.73 | | |||
| AI427515 | STRd | Striatum dorsal region | 50 | |
| 34.89 | | |||
| AI427515 | STRv | Striatum ventral region | 50 | |
| 37.9 | | |||
| AI427515 | TH | Thalamus | 23.36 | |
| 23.75 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00063023 | 12 | 77 | 88 | ACGLNFIDLMVR | Peptide Atlas |