Annotation Detail for TNRC6C
Basic Information Top
| Gene Symbol: | TNRC6C ( FLJ20015,KIAA1582 ) |
|---|---|
| Gene Full Name: | trinucleotide repeat containing 6C |
| Band: | 17q25.3 |
| Quick Links | Entrez ID:57690; OMIM: 610741; Uniprot ID:TNR6C_HUMAN; ENSEMBL ID: ENSG00000078687; HGNC ID: 29318 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.569831
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 34 / 564012 | 60 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 63 / 1939121 | 32 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 151 / 3360307 | 44 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 6 / 104616 | 57 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 50 / 1100989 | 45 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 18 / 211054 | 85 | |
| heart | 2 / 89626 | 22 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 3 / 24145 | 124 | |
| liver | 1 / 207743 | 4 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 23 / 91610 | 251 |  |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 7 / 330442 | 21 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P392501
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 10.46 ± 0.34 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 10.37 ± 0.25 | |
| Basal Part of Pons | 9.9 ± 0.24 | |
| Cerebellar Cortex | 10.58 ± 0.19 | |
| Cerebellar Nuclei | 10.12 ± 0.29 | |
| Claustrum | 10.48 ± 0.4 | |
| Epithalamus | 10.28 ± 0.42 | |
| Frontal Lobe | 10.07 ± 0.31 | |
| Globus Pallidus | 10.13 ± 0.24 | |
| Hypothalamus | 10.15 ± 0.41 | |
| Insula | 10.31 ± 0.31 | |
| Limbic Lobe | 10.31 ± 0.43 | |
| Mesencephalon | 10.33 ± 0.33 | |
| Myelencephalon | 10.28 ± 0.36 | |
| Occipital Lobe | 10.65 ± 0.47 | |
| Parietal Lobe | 10.24 ± 0.26 | |
| Pontine Tegmentum | 10.23 ± 0.34 | |
| Striatum | 10.1 ± 0.35 | |
| Subthalamus | 10.11 ± 0.38 | |
| Temporal Lobe | 10.19 ± 0.28 | |
| Thalamus | 10.15 ± 0.29 | |
| White Matter | 11.26 ± 0.25 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tnrc6c | CB | Cerebellum | 11.46 | |
| 12.09 | | |||
| Tnrc6c | CTX | Cerebral cortex | 36.01 | |
| 24.23 | | |||
| Tnrc6c | HIP | Hippocampal region | 69.64 | |
| 99.71 | | |||
| Tnrc6c | HPF | Hippocampal formation | 62.26 | |
| 73.77 | | |||
| Tnrc6c | HY | Hypothalamus | 4.84 | |
| 3.52 | | |||
| Tnrc6c | LSX | Lateral septal complex | 14.84 | |
| 9.17 | | |||
| Tnrc6c | MB | Midbrain | 7.68 | |
| 5.81 | | |||
| Tnrc6c | MY | Medulla | 5.89 | |
| 5.21 | | |||
| Tnrc6c | OLF | Olfactory bulb | 35.79 | |
| 26.12 | | |||
| Tnrc6c | P | Pons | 4.87 | |
| 3.7 | | |||
| Tnrc6c | PAL | Pallidum | 5.56 | |
| 3.95 | | |||
| Tnrc6c | RHP | Retrohippocampal region | 46.44 | |
| 34.57 | | |||
| Tnrc6c | sAMY | Striatum-like amygdalar nuclei | 14.76 | |
| 9.04 | | |||
| Tnrc6c | STR | Striatum | 12.74 | |
| 8.37 | | |||
| Tnrc6c | STRd | Striatum dorsal region | 12.75 | |
| 8.5 | | |||
| Tnrc6c | STRv | Striatum ventral region | 11.35 | |
| 7.64 | | |||
| Tnrc6c | TH | Thalamus | 10.57 | |
| 10.3 | |